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EU409559.1__ACB72572.1__X__00032
Bact-VirEU409559.1__ACB72572.1__X__00032
Identity
- Accession:
- EU409559 ↗
- Kingdom:
- phage
Quality
85.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-75
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1eucB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.64 | 57.0 | 4.44e-01 | 100.0% | 64.5% |
| 2ddmB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.63 | 44.0 | 2.99e-01 | 73.6% | 83.0% |
| 3s63A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.62 | 47.0 | 4.45e-01 | 83.3% | 69.3% |
| 3kheA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.61 | 45.0 | 3.98e-01 | 79.2% | 94.4% |
| 7ocsB01 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.61 | 44.0 | 3.41e-01 | 87.5% | 32.4% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.60 | 47.0 | 3.88e-01 | 86.1% | 84.7% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 48.0 | 4.59e-01 | 93.1% | 90.8% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 50.0 | 4.12e-01 | 97.2% | 94.3% |
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.57 | 35.0 | 3.83e-01 | 93.1% | 73.8% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 47.0 | 4.48e-01 | 94.4% | 88.9% |
| 3zojA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.56 | 43.0 | 3.03e-01 | 86.1% | 68.8% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.55 | 38.0 | 3.17e-01 | 100.0% | 41.6% |
| 3sqiA01 | 1.10.150.540 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.54 | 42.0 | 3.92e-01 | 97.2% | 66.7% |
| 4oa3A00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.53 | 42.0 | 3.45e-01 | 88.9% | 66.7% |
| 8hdlA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 42.0 | 3.06e-01 | 93.1% | 39.8% |
| 1nklA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.53 | 40.0 | 3.98e-01 | 87.5% | 79.5% |
| 1f68A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.53 | 42.0 | 3.81e-01 | 90.3% | 84.5% |
| 2raaA00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.52 | 40.0 | 3.17e-01 | 93.1% | 36.0% |
| 4i16A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 38.0 | 3.61e-01 | 81.9% | 64.4% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4022146 | 101.1.2.520 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7779 | 0.70 | 51.0 | 4.63e-01 | 88.9% | 57.0% |
| 3990494 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.68 | 53.0 | 5.06e-01 | 84.7% | 77.6% |
| 4928310 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.67 | 56.0 | 5.14e-01 | 93.1% | 88.2% |
| 4426344 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.63 | 47.0 | 4.79e-01 | 86.1% | 85.3% |
| 4940179 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.62 | 48.0 | 3.79e-01 | 86.1% | 44.4% |
| 5001161 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 48.0 | 4.19e-01 | 87.5% | 64.3% |
| 3255955 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.61 | 47.0 | 4.50e-01 | 86.1% | 71.8% |
| 154671 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.60 | 49.0 | 3.53e-01 | 93.1% | 33.5% |
| 142836 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.58 | 48.0 | 3.43e-01 | 94.4% | 49.8% |
| 3713438 | 108.1.1.27 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 | 0.58 | 42.0 | 4.27e-01 | 81.9% | 80.0% |
| 3281363 | 191.1.1.1 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 | 0.58 | 43.0 | 3.73e-01 | 81.9% | 60.0% |
| 5059392 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.57 | 44.0 | 3.35e-01 | 91.7% | 32.6% |
| 3643621 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.56 | 36.0 | 3.55e-01 | 72.2% | 60.0% |
| 4041623 | 632.2.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › FIVAR | 0.54 | 32.0 | 3.19e-01 | 94.4% | 56.0% |
| 3244587 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.54 | 43.0 | 3.65e-01 | 94.4% | 57.8% |
| 4937201 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.53 | 38.0 | 3.61e-01 | 76.4% | 68.9% |
| 3262 | 198.1.1.26 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF31278 | 0.53 | 40.0 | 3.98e-01 | 87.5% | 79.5% |
| 4972573 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 41.0 | 2.68e-01 | 88.9% | 17.3% |
| 3914408 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.51 | 35.0 | 3.20e-01 | 72.2% | 51.5% |
D2
medium
residues 76-201_219-245
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26125.1 best | AcrVA2-like | 66.3 | 7.00e-18 | 97.4% | 82.9% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gkaB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 42.0 | 4.07e-01 | 83.0% | 85.1% |
| 2hzrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 41.0 | 4.10e-01 | 81.7% | 82.6% |
| 1dfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 44.0 | 4.22e-01 | 87.6% | 90.2% |
| 2l5pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 41.0 | 4.00e-01 | 82.4% | 82.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3517323 | 3131.1.1.2 ↗ | a+b two layers › FYR domain › FYR domain › FYR domain › FYRN | 0.61 | 43.0 | 4.93e-01 | 77.1% | 100.0% |
| 3802306 | 284.1.2.0 ↗ | a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases | 0.58 | 35.0 | 4.25e-01 | 77.1% | 96.8% |
| None | — | 0.56 | 43.0 | 4.01e-01 | 79.7% | 86.3% | |
| 3342794 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.56 | 31.0 | 3.87e-01 | 74.5% | 91.1% |
| 3875866 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.55 | 42.0 | 4.13e-01 | 81.7% | 82.9% |
| 3286878 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.54 | 42.0 | 4.14e-01 | 81.7% | 87.5% |
| 4451493 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.53 | 42.0 | 4.08e-01 | 84.3% | 85.5% |
| 3946522 | 9.1.1.36 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3833 | 0.52 | 38.0 | 3.87e-01 | 75.8% | 97.4% |
| 136368 | 9.1.1.18 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › ApoM | 0.52 | 43.0 | 4.16e-01 | 87.6% | 84.7% |
| 3607721 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.52 | 37.0 | 3.46e-01 | 72.5% | 92.1% |
| 3663999 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.51 | 38.0 | 2.96e-01 | 76.5% | 92.9% |
D3
medium
residues 246-303
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26125.1 best | AcrVA2-like | 54.2 | 3.30e-14 | 69.0% | 15.8% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x24A03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.61 | 41.0 | 2.57e-01 | 70.7% | 39.3% |
| 5xc5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 48.0 | 3.54e-01 | 94.8% | 62.9% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.56 | 41.0 | 3.99e-01 | 81.0% | 69.7% |
| 3rd4B00 | 2.40.50.660 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 39.0 | 3.55e-01 | 77.6% | 84.1% |
| 2d42A02 | 3.10.450.380 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 34.0 | 3.29e-01 | 81.0% | 53.8% |
| 3gw6A03 | 3.30.2460.10 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain | 0.54 | 37.0 | 3.74e-01 | 72.4% | 96.5% |
| 7sxqA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 43.0 | 2.87e-01 | 89.7% | 81.0% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.53 | 40.0 | 3.64e-01 | 81.0% | 70.5% |
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.53 | 42.0 | 3.06e-01 | 89.7% | 65.9% |
| 3anzC00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.53 | 35.0 | 2.31e-01 | 74.1% | 13.9% |
| 1ry6A00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.53 | 40.0 | 2.54e-01 | 84.5% | 99.7% |
| 4hstB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.51 | 39.0 | 3.78e-01 | 86.2% | 73.5% |
| 3n77A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.50 | 42.0 | 3.25e-01 | 96.6% | 73.0% |
| 6nvxB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.50 | 39.0 | 3.67e-01 | 91.4% | 72.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3599732 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.60 | 51.0 | 3.51e-01 | 100.0% | 70.9% |
| 4028991 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.60 | 44.0 | 2.72e-01 | 81.0% | 41.3% |
| 4833097 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.59 | 39.0 | 3.11e-01 | 87.9% | 32.0% |
| 5007905 | 205.1.1.17 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 | 0.58 | 43.0 | 2.98e-01 | 81.0% | 33.3% |
| 5044328 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.58 | 41.0 | 2.77e-01 | 75.9% | 40.0% |
| 3450430 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 43.0 | 3.18e-01 | 89.7% | 28.6% |
| 3194238 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.56 | 41.0 | 2.80e-01 | 82.8% | 75.1% |
| 3333319 | 5090.1.1.7 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › HAP2-GCS1 | 0.54 | 44.0 | 2.77e-01 | 98.3% | 54.1% |
| 3397976 | 913.1.1.0 ↗ | few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) | 0.54 | 42.0 | 3.87e-01 | 84.5% | 69.3% |
| 3312290 | 7055.1.1.1 ↗ | beta complex topology › Domain II of HAP2 › Domain II of HAP2 › Domain II of HAP2 › HAP2-GCS1 | 0.53 | 43.0 | 2.73e-01 | 98.3% | 60.8% |
| 3252786 | 246.2.1.3 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos,Metallophos_C | 0.53 | 46.0 | 2.93e-01 | 100.0% | 66.5% |
| 5060353 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.53 | 40.0 | 2.73e-01 | 81.0% | 59.0% |
| 4015446 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 41.0 | 3.10e-01 | 91.4% | 33.5% |
| 3790670 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.52 | 40.0 | 3.16e-01 | 93.1% | 66.0% |
| 3479321 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.52 | 36.0 | 2.23e-01 | 74.1% | 44.9% |
| 3717097 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.51 | 41.0 | 2.41e-01 | 89.7% | 26.9% |
| 4547928 | 11.1.1.61 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Hemocyanin_C | 0.51 | 39.0 | 2.96e-01 | 86.2% | 58.7% |
| 3224634 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.51 | 36.0 | 2.25e-01 | 75.9% | 32.2% |
| 5016346 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.51 | 37.0 | 2.98e-01 | 79.3% | 77.5% |
| 3394803 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.51 | 37.0 | 2.66e-01 | 79.3% | 59.4% |
| 4979052 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 40.0 | 3.51e-01 | 87.9% | 76.7% |