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EU409559.1__ACB72600.1__X__00060

Bact-Vir

EU409559.1__ACB72600.1__X__00060

Identity

Accession:
EU409559 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_JCL1032

TaxID: 37105

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-70
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 51.0 3.25e-01 89.6% 38.7%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.62 48.0 3.67e-01 88.1% 99.4%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.61 47.0 3.98e-01 83.6% 89.4%
4lg8A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 48.0 3.06e-01 83.6% 50.0%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.61 47.0 4.48e-01 86.6% 80.0%
4o4bB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.61 39.0 2.68e-01 79.1% 17.6%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.61 45.0 3.60e-01 80.6% 73.8%
4ntcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 49.0 4.06e-01 94.0% 99.2%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 49.0 3.16e-01 95.5% 28.5%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 36.0 3.36e-01 94.0% 51.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 4.14e-01 89.6% 89.1%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 3.96e-01 92.5% 75.8%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 41.0 3.85e-01 86.6% 65.1%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 45.0 3.82e-01 95.5% 80.7%
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.54 46.0 2.89e-01 100.0% 62.1%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.54 45.0 3.53e-01 100.0% 88.3%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 46.0 3.22e-01 100.0% 44.1%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.86e-01 89.6% 91.7%
3va7A04 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.52 40.0 3.09e-01 83.6% 66.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.72e-01 92.5% 84.5%
3eebA00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.51 40.0 2.91e-01 89.6% 83.9%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3755669 391.1.1.5 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.69 33.0 4.20e-01 89.6% 77.5%
5078315 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 48.0 2.82e-01 86.6% 13.7%
3761115 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 51.0 3.08e-01 91.0% 14.0%
3190113 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 49.0 3.14e-01 86.6% 50.8%
4516528 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 43.0 3.58e-01 74.6% 46.1%
3886882 2004.1.1.118 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.60 41.0 2.54e-01 71.6% 80.2%
5023356 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.60 52.0 3.31e-01 100.0% 67.2%
25624 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.59 39.0 4.34e-01 94.0% 88.5%
3347939 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.59 48.0 4.82e-01 91.0% 97.1%
3968342 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.57 39.0 4.24e-01 88.1% 88.7%
5077602 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.56 47.0 3.19e-01 97.0% 51.1%
3945544 4317.1.1.1 ↗ a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 0.56 32.0 3.42e-01 74.6% 61.7%
3991315 2004.1.1.534 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF30386 0.56 47.0 3.41e-01 95.5% 40.0%
3605262 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 46.0 3.95e-01 92.5% 77.3%
3503638 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.56 48.0 3.48e-01 95.5% 41.8%
3977126 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.56 38.0 4.11e-01 92.5% 87.3%
3979842 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.55 38.0 4.10e-01 88.1% 89.1%
3550809 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 48.0 2.94e-01 95.5% 19.0%
3579051 5.1.8.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › WD40 0.54 46.0 3.89e-01 95.5% 67.0%
4031258 4317.1.1.0 ↗ a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like 0.54 36.0 3.77e-01 92.5% 76.7%
3604219 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 45.0 4.23e-01 98.5% 98.8%
4540843 4.1.1.434 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2642 0.53 36.0 3.72e-01 92.5% 75.4%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.52 37.0 3.85e-01 92.5% 83.3%
4939609 2008.5.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Uncharacterized protein AF_2093 C-terminal domain › Uncharacterized protein AF_2093 C-terminal domain › DUF6834_C 0.52 39.0 3.15e-01 82.1% 68.9%
3177048 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.52 44.0 3.92e-01 95.5% 90.5%
3351103 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.52 41.0 3.45e-01 95.5% 87.4%
3930660 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.51 42.0 3.74e-01 92.5% 90.8%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.51 37.0 3.81e-01 97.0% 83.1%
3260051 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.50 39.0 2.75e-01 92.5% 89.9%
4971470 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.50 37.0 3.58e-01 97.0% 70.7%