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EU409559.1__ACB72608.1__X__00068
Bact-VirEU409559.1__ACB72608.1__X__00068
Identity
- Accession:
- EU409559 ↗
- Kingdom:
- phage
Quality
94.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-67
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jolA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.63 | 44.0 | 4.19e-01 | 75.8% | 89.0% |
| 4gxbA02 | 1.20.80.60 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.59 | 43.0 | 4.38e-01 | 90.9% | 83.9% |
| 4oo0B00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.57 | 46.0 | 3.43e-01 | 97.0% | 73.0% |
| 1gaxA03 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.54 | 44.0 | 3.54e-01 | 100.0% | 92.2% |
| 4iiwA01 | 3.30.1490.480 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Endolytic murein transglycosylase | 0.53 | 42.0 | 4.09e-01 | 90.9% | 96.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5078668 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.56 | 46.0 | 3.41e-01 | 98.5% | 72.7% |
| 4279831 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.55 | 45.0 | 3.43e-01 | 97.0% | 75.7% |
| 3803343 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.53 | 42.0 | 3.59e-01 | 90.9% | 84.3% |
| 3433288 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.52 | 45.0 | 3.21e-01 | 100.0% | 99.1% |
| 3471417 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.50 | 41.0 | 3.78e-01 | 100.0% | 68.5% |
D2
high
residues 70-166
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bg2A02 | 1.10.3550.10 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › eoxyguanosinetriphosphate triphosphohydrolase domain-like | 0.67 | 43.0 | 4.15e-01 | 91.8% | 57.1% |
| 2h09A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.62 | 32.0 | 3.95e-01 | 89.7% | 83.9% |
| 2felA00 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.61 | 49.0 | 3.39e-01 | 86.6% | 59.6% |
| 2g8lA02 | 1.10.285.20 | Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 | 0.61 | 31.0 | 3.66e-01 | 89.7% | 70.8% |
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.59 | 35.0 | 3.67e-01 | 91.8% | 63.3% |
| 1h6gA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.58 | 44.0 | 4.18e-01 | 80.4% | 95.0% |
| 3hl0A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.58 | 46.0 | 3.73e-01 | 87.6% | 45.5% |
| 4uobA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.57 | 42.0 | 3.88e-01 | 78.4% | 97.6% |
| 5h0pA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 40.0 | 4.03e-01 | 74.2% | 86.3% |
| 6elqA01 | 1.20.1270.30 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 47.0 | 3.93e-01 | 92.8% | 81.2% |
| 2lhiA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 41.0 | 3.46e-01 | 78.4% | 77.3% |
| 4kjmB01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.55 | 32.0 | 3.80e-01 | 90.7% | 88.9% |
| 7wf8B01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.55 | 45.0 | 4.28e-01 | 92.8% | 100.0% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.55 | 44.0 | 4.10e-01 | 89.7% | 91.2% |
| 4im7A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.54 | 46.0 | 3.62e-01 | 92.8% | 84.1% |
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 37.0 | 3.57e-01 | 70.1% | 86.8% |
| 7dniC02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 44.0 | 4.46e-01 | 99.0% | 94.7% |
| 5e37A02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 40.0 | 4.24e-01 | 79.4% | 90.7% |
| 7lb8B01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.54 | 46.0 | 3.28e-01 | 96.9% | 76.3% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 37.0 | 3.80e-01 | 72.2% | 100.0% |
| 4unfA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.53 | 38.0 | 3.67e-01 | 77.3% | 96.6% |
| 1bcrA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 39.0 | 2.91e-01 | 78.4% | 71.7% |
| 2lwdA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 43.0 | 4.40e-01 | 100.0% | 94.8% |
| 1c17M00 | 1.20.120.220 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ATP synthase, F0 complex, subunit A | 0.52 | 38.0 | 3.41e-01 | 77.3% | 85.2% |
| 4azcA02 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.51 | 29.0 | 3.39e-01 | 90.7% | 86.4% |
| 1dkxA02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 34.0 | 3.65e-01 | 71.1% | 82.5% |
| 2imhA01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 43.0 | 3.41e-01 | 94.8% | 89.2% |
| 4iu9B01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.51 | 39.0 | 2.98e-01 | 80.4% | 76.8% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.50 | 38.0 | 3.52e-01 | 80.4% | 100.0% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4453525 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.70 | 34.0 | 4.11e-01 | 89.7% | 69.2% |
| 4075710 | 108.1.1.96 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 | 0.66 | 45.0 | 4.37e-01 | 70.1% | 79.1% |
| 3586205 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.64 | 36.0 | 3.29e-01 | 93.8% | 41.6% |
| 3599927 | 5076.1.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier | 0.62 | 35.0 | 2.59e-01 | 78.4% | 20.4% |
| 3593195 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.62 | 49.0 | 5.22e-01 | 90.7% | 95.3% |
| 4986460 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.61 | 33.0 | 2.97e-01 | 90.7% | 35.0% |
| 3465762 | 108.1.1.109 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7, EF-hand_8 | 0.61 | 43.0 | 3.55e-01 | 74.2% | 87.2% |
| 3538287 | 108.1.1.144 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › Dockerin_1 | 0.60 | 45.0 | 4.04e-01 | 79.4% | 74.8% |
| 3867229 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.59 | 42.0 | 4.34e-01 | 100.0% | 80.0% |
| 3253931 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.58 | 43.0 | 3.73e-01 | 78.4% | 83.2% |
| 3362321 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.58 | 43.0 | 4.45e-01 | 78.4% | 100.0% |
| 3879126 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.57 | 39.0 | 4.03e-01 | 70.1% | 90.0% |
| 3576389 | 108.1.1.98 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 | 0.57 | 40.0 | 3.86e-01 | 74.2% | 98.3% |
| 3688033 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.56 | 50.0 | 4.06e-01 | 97.9% | 79.4% |
| 3207635 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.55 | 40.0 | 3.46e-01 | 77.3% | 78.8% |
| 3452001 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.54 | 40.0 | 3.28e-01 | 77.3% | 58.9% |
| 4134938 | 601.3.1.14 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PF27870 | 0.54 | 40.0 | 3.84e-01 | 80.4% | 80.0% |
| 3957589 | 605.1.1.164 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF4191 | 0.54 | 32.0 | 3.25e-01 | 79.4% | 57.0% |
| 3605313 | 4010.1.1.2 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 0.54 | 46.0 | 3.02e-01 | 97.9% | 80.2% |
| 4968904 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 42.0 | 2.94e-01 | 85.6% | 60.9% |
| 4608311 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.53 | 40.0 | 2.89e-01 | 81.4% | 40.0% |
| 3887760 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.52 | 38.0 | 3.80e-01 | 77.3% | 81.0% |
| 4453955 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.52 | 32.0 | 3.01e-01 | 71.1% | 47.2% |
| 4991390 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.52 | 33.0 | 3.37e-01 | 78.4% | 65.3% |
| 3707908 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.51 | 43.0 | 4.15e-01 | 92.8% | 86.4% |
| 3678317 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.51 | 42.0 | 4.36e-01 | 97.9% | 95.6% |