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EU409559.1__ACB72614.1__X__00074

Bact-Vir

EU409559.1__ACB72614.1__X__00074

Identity

Accession:
EU409559 ↗
Kingdom:
phage

Quality

52.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_JCL1032

TaxID: 37105

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-106
PDB
D2 high residues 168-266
PDB
Domain cluster: rep: IMGVR_UViG_3300045988_178991-3300045988-Ga0495776_136811_259_1059__D1-116
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08401.17 best ArdcN 33.7 5.40e-08 92.9% 52.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3es1A01 2.20.70.150 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 21.0 3.17e-01 83.8% 83.8%
2cpfA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 29.0 3.01e-01 98.0% 50.0%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 28.0 2.90e-01 73.7% 48.9%
7w3rB01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 43.0 3.13e-01 90.9% 92.8%
3iibA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 46.0 3.42e-01 100.0% 93.8%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961902 3609.1.1.4 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN 0.83 78.0 7.36e-01 100.0% 92.2%
3947849 3609.1.1.4 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN 0.79 60.0 6.35e-01 79.8% 100.0%
3612863 3609.1.1.3 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › Tc-38 0.66 59.0 4.50e-01 96.0% 54.0%
3575624 386.1.1.29 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-TRAF_2 0.55 30.0 3.61e-01 86.9% 81.2%
4883709 4032.1.1.0 ↗ beta complex topology › barrel domains in phase 1 flagellin › barrel domains in phase 1 flagellin › barrel domains in phase 1 flagellin 0.53 22.0 2.92e-01 88.9% 69.2%
4224443 1.1.5.44 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › SecDF_P1_head 0.51 31.0 2.68e-01 93.9% 35.6%