←Back to structures

EU438902.1__ACA21477.1__X__00003

Bact-Vir

EU438902.1__ACA21477.1__X__00003

Identity

Accession:
EU438902 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salasmaviridae› Lactococcus_phage_asccphi28

TaxID: 503388

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-68
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 49.0 4.94e-01 97.0% 72.7%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 4.21e-01 98.5% 47.1%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 47.0 4.98e-01 95.5% 78.3%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 45.0 5.17e-01 94.0% 93.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 45.0 4.75e-01 95.5% 85.0%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 40.0 3.02e-01 100.0% 27.5%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 42.0 3.56e-01 100.0% 42.9%
2mvzA00 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.60 53.0 4.14e-01 100.0% 98.6%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 53.0 5.08e-01 100.0% 85.7%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.59 40.0 3.90e-01 100.0% 63.2%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.83e-01 98.5% 91.3%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.59 43.0 3.86e-01 100.0% 55.2%
1hywA00 3.30.1580.10 Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W 0.58 44.0 4.61e-01 100.0% 96.6%
3dbgA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 46.0 2.91e-01 89.6% 70.7%
6qu3A02 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 40.0 2.95e-01 74.6% 32.8%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 42.0 3.44e-01 83.6% 69.6%
4iduB01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.55 42.0 3.55e-01 86.6% 73.2%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 45.0 4.08e-01 92.5% 78.7%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 45.0 4.13e-01 94.0% 83.7%
1pfkA01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 38.0 2.85e-01 74.6% 28.0%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 44.0 3.04e-01 94.0% 44.7%
4bgpA01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.54 43.0 3.60e-01 91.0% 78.7%
3zlaD01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.54 42.0 3.55e-01 89.6% 77.8%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 38.0 3.49e-01 100.0% 55.4%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 44.0 2.80e-01 97.0% 74.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 48.0 3.58e-01 100.0% 47.9%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 36.0 3.21e-01 73.1% 60.9%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.53 38.0 2.99e-01 77.6% 39.4%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 41.0 3.69e-01 100.0% 61.7%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 44.0 3.67e-01 100.0% 97.6%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 45.0 3.32e-01 100.0% 54.9%
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.50 36.0 3.59e-01 97.0% 70.8%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4632256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.91 84.0 8.03e-01 98.5% 96.0%
5017559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 79.0 8.09e-01 97.0% 100.0%
4231372 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.81 72.0 7.15e-01 100.0% 100.0%
3959440 4.1.1.180 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3107 0.79 70.0 7.12e-01 98.5% 100.0%
4995694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 57.0 6.22e-01 98.5% 96.4%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.74 52.0 4.88e-01 98.5% 61.3%
5063433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.60e-01 98.5% 96.0%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 64.0 6.32e-01 98.5% 91.4%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.43e-01 98.5% 87.3%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 46.0 5.44e-01 92.5% 97.8%
139950 4.1.1.126 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5608 0.72 49.0 5.30e-01 98.5% 85.7%
4662294 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 48.0 5.24e-01 95.5% 85.5%
1482194 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.70 47.0 4.98e-01 95.5% 78.3%
4975764 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.70 48.0 4.81e-01 98.5% 70.0%
4656461 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 47.0 4.90e-01 95.5% 78.3%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.16e-01 100.0% 77.1%
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 49.0 5.02e-01 100.0% 79.4%
4069793 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 52.0 5.21e-01 100.0% 78.6%
4158495 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.69 49.0 4.47e-01 100.0% 56.7%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 51.0 5.13e-01 100.0% 78.3%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.95e-01 100.0% 76.9%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 51.0 5.23e-01 100.0% 83.1%
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 51.0 4.55e-01 100.0% 56.8%
4974211 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.67 46.0 4.82e-01 94.0% 80.0%
4499953 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 47.0 4.90e-01 98.5% 81.7%
4185009 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 50.0 5.07e-01 100.0% 83.1%
4088209 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 49.0 4.99e-01 100.0% 81.5%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.47e-01 98.5% 68.6%
4216845 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 49.0 4.78e-01 100.0% 74.0%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 48.0 4.85e-01 100.0% 78.3%
4332042 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.48e-01 100.0% 70.0%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 48.0 4.68e-01 100.0% 72.0%
4124780 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 48.0 4.71e-01 100.0% 74.0%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 48.0 4.69e-01 100.0% 74.0%
4476045 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 48.0 4.78e-01 100.0% 78.6%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 47.0 4.83e-01 100.0% 83.1%
3552986 11.1.1.275 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Ra_N 0.64 40.0 3.75e-01 100.0% 50.6%
4212091 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 46.0 4.74e-01 100.0% 83.1%
4261362 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 47.0 4.69e-01 100.0% 78.6%
3959955 304.163.1.3 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.62 40.0 4.57e-01 100.0% 97.8%
4139778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 47.0 4.57e-01 100.0% 75.3%
4286562 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 45.0 4.63e-01 100.0% 83.1%
5002173 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 47.0 4.33e-01 85.1% 66.7%
3588755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 5.10e-01 100.0% 87.8%
3280234 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.60 46.0 3.11e-01 86.6% 21.5%
4992167 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.59 46.0 2.74e-01 85.1% 48.2%
5041715 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 37.0 3.24e-01 73.1% 40.0%
3993677 823.1.1.0 ↗ a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW 0.58 46.0 4.59e-01 100.0% 85.7%
4015057 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 52.0 4.50e-01 98.5% 85.0%
4573100 2484.1.1.206 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70, FGGY_C 0.58 46.0 3.41e-01 89.6% 32.1%
3722424 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.58 52.0 4.56e-01 100.0% 84.0%
3187241 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.58 52.0 4.41e-01 100.0% 78.2%
4182977 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.57 36.0 3.74e-01 92.5% 68.3%
3493963 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.57 38.0 3.38e-01 70.1% 50.0%
5022626 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.56 44.0 4.62e-01 86.6% 95.0%
3606454 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.56 47.0 4.75e-01 92.5% 98.5%
3613410 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.56 51.0 4.68e-01 100.0% 88.2%
4634588 2007.1.4.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › PFK 0.55 38.0 2.80e-01 74.6% 61.9%
3706132 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 48.0 4.47e-01 98.5% 89.4%
224425 3644.1.1.2 ↗ alpha complex topology › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Bunya_nucleocap 0.55 42.0 3.00e-01 88.1% 39.3%
164160 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 45.0 3.98e-01 94.0% 73.5%
4959077 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.67e-01 95.5% 100.0%
3890381 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 46.0 4.42e-01 97.0% 93.8%
3624307 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 33.0 2.90e-01 80.6% 37.3%
3320228 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.54 41.0 2.40e-01 82.1% 47.5%
4026547 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 41.0 2.71e-01 86.6% 25.4%
5050684 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 3.59e-01 89.6% 54.5%
5029669 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 38.0 3.19e-01 100.0% 45.0%
3392569 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 40.0 3.33e-01 100.0% 46.4%
4944138 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 41.0 3.63e-01 91.0% 58.1%
3682008 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 35.0 2.91e-01 91.0% 39.5%
4985746 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 40.0 3.52e-01 91.0% 57.1%
4234725 304.28.1.4 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.50 45.0 3.99e-01 100.0% 88.4%