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ACB37250.1

Arc-Vir

EU545650__ACB37250.1__X__00016

Identity

Accession:
EU545650 ↗
Protein ID:
ACB37250.1 ↗
Kingdom:
archaea

Quality

69.8 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Lipothrixviridae› Betalipothrixvirus› Betalipothrixvirus_uzonense

TaxID: 512792

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-89
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4pdxA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.72 46.0 4.08e-01 73.6% 44.8%
6xkyA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.70 49.0 3.76e-01 72.4% 59.4%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.68 51.0 4.44e-01 86.2% 54.0%
1nijA02 3.30.1220.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Yjia; Chain: A;domain 2 › CobW-like, C-terminal domain 0.64 46.0 4.22e-01 89.7% 56.9%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.61 38.0 4.16e-01 83.9% 78.3%
3r1kA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.60 36.0 3.55e-01 80.5% 53.1%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.59 44.0 3.81e-01 79.3% 52.9%
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 45.0 3.47e-01 86.2% 57.3%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 34.0 3.97e-01 75.9% 92.9%
2y1vA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 51.0 3.97e-01 100.0% 55.1%
3ilvA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.56 48.0 3.52e-01 98.9% 54.5%
3g7nB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 46.0 3.39e-01 95.4% 72.4%
6iy8A01 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.53 45.0 3.61e-01 97.7% 83.1%
5uayA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 36.0 3.75e-01 74.7% 74.7%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 3.02e-01 93.1% 86.2%
1gwiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 45.0 2.99e-01 100.0% 48.8%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 42.0 4.08e-01 90.8% 79.4%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 41.0 3.87e-01 90.8% 70.4%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 44.0 3.42e-01 100.0% 42.5%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 37.0 2.96e-01 78.2% 56.0%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 43.0 2.80e-01 94.3% 88.6%
2qh0A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 38.0 3.34e-01 79.3% 93.0%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.78e-01 88.5% 81.5%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5071765 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 47.0 4.17e-01 79.3% 50.4%
4464688 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.67 44.0 4.37e-01 85.1% 62.8%
3590768 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.65 45.0 4.47e-01 85.1% 68.9%
2448259 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.64 45.0 3.97e-01 72.4% 52.4%
4964955 223.2.1.63 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.62 45.0 3.97e-01 75.9% 54.3%
5016447 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.61 42.0 4.24e-01 85.1% 71.8%
3369389 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.61 43.0 4.27e-01 89.7% 68.4%
3620870 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 44.0 4.26e-01 77.0% 67.0%
3507450 223.2.1.12 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.60 43.0 3.81e-01 77.0% 52.0%
3839737 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.59 41.0 4.11e-01 85.1% 70.0%
3189294 884.1.1.0 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain 0.59 46.0 4.13e-01 86.2% 68.0%
3925335 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 43.0 3.82e-01 77.0% 53.6%
3240591 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.58 42.0 3.16e-01 79.3% 29.2%
4032585 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.57 40.0 4.08e-01 90.8% 74.1%
3313688 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.57 42.0 4.10e-01 89.7% 69.0%
3461740 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.57 42.0 4.07e-01 89.7% 69.7%
3282850 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.56 46.0 4.09e-01 92.0% 60.8%
3522105 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.56 43.0 4.05e-01 89.7% 67.6%
3591940 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.56 40.0 3.11e-01 77.0% 34.2%
3933591 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 46.0 4.04e-01 92.0% 91.1%
4002401 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.55 44.0 4.26e-01 92.0% 81.0%
1147663 2006.1.1.9 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › UMPH-1 0.54 44.0 3.12e-01 92.0% 68.3%
None — 0.54 43.0 3.05e-01 85.1% 60.4%
3344476 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.54 40.0 3.52e-01 79.3% 51.1%
3549076 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.54 44.0 4.21e-01 92.0% 79.0%
5061635 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 2.91e-01 100.0% 26.4%
5026951 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 38.0 3.41e-01 74.7% 83.2%
3628378 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.53 42.0 3.40e-01 85.1% 80.6%
4990974 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 38.0 3.86e-01 74.7% 89.4%
3498726 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.53 42.0 4.00e-01 90.8% 73.3%
3317246 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.53 47.0 4.40e-01 100.0% 83.6%
3595889 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.53 40.0 3.44e-01 80.5% 83.0%
3935139 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 41.0 3.55e-01 90.8% 53.1%
3638725 884.1.1.0 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain 0.52 41.0 3.53e-01 89.7% 52.0%
3351970 7512.1.1.24 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.51 44.0 3.32e-01 100.0% 72.1%
3692799 2003.1.2.65 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_3 0.51 42.0 2.65e-01 94.3% 95.3%
3219544 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 44.0 3.11e-01 100.0% 56.9%
5029970 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.50 36.0 3.55e-01 78.2% 76.8%