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EU588980.1__ACE81987.1__X__00005

Bact-Vir

EU588980.1__ACE81987.1__X__00005

Identity

Accession:
EU588980 ↗
Kingdom:
phage

Quality

78.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-196
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.75 30.0 4.75e-01 97.4% 94.7%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 31.0 4.25e-01 95.9% 75.7%
4gnkE00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.72 56.0 5.21e-01 79.4% 92.3%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.69 39.0 5.23e-01 77.8% 100.0%
3ljbA00 1.20.120.1240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Dynamin, middle domain 0.68 62.0 5.98e-01 100.0% 85.8%
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.68 54.0 5.02e-01 82.5% 92.6%
4mk6A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 41.0 4.16e-01 84.0% 60.6%
6ircA01 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.66 46.0 4.56e-01 70.6% 99.0%
4bejB02 1.20.120.1240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Dynamin, middle domain 0.64 57.0 5.42e-01 100.0% 82.1%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.63 43.0 5.11e-01 80.9% 100.0%
4dveA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.62 35.0 3.55e-01 88.7% 54.0%
3owaA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 36.0 3.85e-01 73.7% 66.1%
4bemJ00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.60 40.0 4.19e-01 83.0% 71.8%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.59 35.0 4.51e-01 88.7% 97.4%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.58 29.0 3.25e-01 75.8% 59.2%
5d91A02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.57 38.0 3.79e-01 93.8% 64.1%
6adqG01 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.57 38.0 3.97e-01 95.4% 72.5%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.57 33.0 3.93e-01 96.9% 85.6%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.56 34.0 4.20e-01 84.5% 96.6%
2nrjA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.56 47.0 3.95e-01 88.7% 88.2%
2e87A01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 41.0 4.50e-01 95.4% 92.5%
1zvzA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 36.0 4.28e-01 96.4% 100.0%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.55 31.0 3.75e-01 93.3% 82.0%
3vkgA15 1.10.8.1220 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 26.0 3.46e-01 83.5% 86.2%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 33.0 4.11e-01 77.8% 96.7%
3ggyA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.54 43.0 4.43e-01 83.0% 94.1%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 36.0 4.17e-01 97.4% 98.4%
1j1jA01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.54 34.0 4.11e-01 87.6% 93.2%
6xpdA01 1.20.1510.10 Mainly Alpha › Up-down Bundle › Alpha-lytic protease prodomain-like › Cation efflux protein transmembrane domain 0.54 39.0 3.87e-01 96.4% 70.3%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 36.0 2.88e-01 88.1% 33.0%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.54 46.0 3.88e-01 91.8% 97.8%
2kbbA00 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.53 34.0 3.61e-01 94.8% 69.5%
2d1lA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.53 39.0 3.63e-01 76.3% 84.7%
3owaB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 31.0 3.43e-01 94.3% 69.4%
6o7uc01 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.52 35.0 3.58e-01 76.8% 68.4%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 29.0 3.68e-01 75.8% 94.4%
2fonA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 28.0 3.25e-01 81.4% 71.3%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.52 27.0 3.29e-01 83.0% 78.1%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.51 31.0 3.71e-01 86.1% 91.1%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 29.0 3.22e-01 88.7% 65.8%
1rx0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 31.0 3.39e-01 83.0% 72.3%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.51 26.0 3.60e-01 74.2% 97.9%
1hciA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 30.0 3.63e-01 74.2% 88.9%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 26.0 3.23e-01 100.0% 77.2%
1quuA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 30.0 3.59e-01 76.3% 88.1%
2ficB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.51 39.0 3.90e-01 79.9% 96.5%
7drjB01 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.50 35.0 3.62e-01 93.3% 74.9%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3274502 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.73 69.0 5.48e-01 100.0% 59.4%
4029182 3871.1.1.0 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST 0.72 50.0 5.62e-01 90.7% 90.7%
3638001 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.72 58.0 5.61e-01 100.0% 76.2%
3931441 3835.1.1.0 alpha bundles › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein 0.71 53.0 5.09e-01 75.3% 98.6%
4581508 601.19.1.1 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Apolipoprotein 0.71 61.0 6.00e-01 100.0% 84.3%
3509220 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.71 53.0 4.82e-01 75.8% 95.9%
4026128 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.70 53.0 5.91e-01 90.2% 99.3%
3206361 6108.1.1.0 alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins 0.69 59.0 5.93e-01 100.0% 88.7%
3567180 4177.1.1.61 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PLC-beta_C 0.68 54.0 5.03e-01 82.0% 95.4%
3875634 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.68 52.0 4.76e-01 78.4% 82.9%
3628013 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.67 53.0 5.05e-01 80.9% 94.1%
4010684 3615.1.1.0 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.67 62.0 4.88e-01 100.0% 54.4%
3596026 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.67 47.0 5.29e-01 79.4% 92.0%
4236667 3615.1.1.0 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.66 62.0 5.61e-01 100.0% 84.3%
3345061 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 44.0 4.88e-01 78.4% 83.2%
3614668 1065.1.1.0 alpha bundles › SPX domain › SPX domain › SPX domain 0.66 52.0 4.39e-01 81.4% 81.3%
3839022 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.66 58.0 5.71e-01 100.0% 87.8%
3921383 4177.1.1.26 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PKK 0.65 50.0 4.69e-01 79.4% 93.8%
3735664 3615.1.1.0 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.65 57.0 4.50e-01 100.0% 47.6%
5001442 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.64 59.0 5.20e-01 100.0% 88.8%
3651674 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.64 58.0 4.00e-01 98.5% 68.9%
3683374 1075.4.1.9 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_tran+ABC_membrane 0.64 59.0 3.73e-01 98.5% 50.2%
5064992 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.64 50.0 3.92e-01 80.9% 60.8%
3476973 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.63 57.0 3.93e-01 98.5% 71.8%
3593076 1075.4.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold 0.62 56.0 3.88e-01 98.5% 71.1%
4031793 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.62 56.0 3.97e-01 100.0% 32.2%
3842813 4177.1.1.140 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF4456 0.61 47.0 4.79e-01 80.9% 92.8%
3881583 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.60 46.0 4.89e-01 78.4% 90.6%
5025147 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.60 42.0 4.67e-01 96.4% 89.7%
3189746 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.59 52.0 3.51e-01 94.3% 86.5%
3437020 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.59 43.0 4.71e-01 91.2% 91.6%
4780326 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.59 43.0 4.42e-01 75.8% 94.8%
4947163 601.30.1.4 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › MMR_HSR1 0.58 43.0 4.67e-01 95.4% 91.9%
3263327 192.29.1.52 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Anthrone_oxy 0.58 38.0 4.32e-01 98.5% 85.3%
5075398 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.58 43.0 4.63e-01 95.4% 89.7%
5049102 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.57 40.0 4.11e-01 91.2% 72.6%
3495555 5079.1.1.0 alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain 0.57 48.0 4.68e-01 100.0% 81.9%
4069307 1075.5.1.8 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 0.55 38.0 3.58e-01 96.4% 56.2%
4014020 192.29.1.4 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Opi1 0.54 39.0 4.21e-01 96.4% 85.9%
3944081 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.53 39.0 4.10e-01 96.4% 83.4%
4121246 4177.2.1.4 alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain › ATG17_like 0.52 46.0 4.00e-01 93.8% 83.9%
3519952 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.51 45.0 4.15e-01 98.5% 72.7%
3547402 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 40.0 4.31e-01 80.4% 94.5%
3633854 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 48.0 3.98e-01 100.0% 87.9%
3557360 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 44.0 3.88e-01 90.7% 87.5%
3806507 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.51 44.0 4.19e-01 93.8% 79.1%
3594185 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.50 32.0 3.21e-01 98.5% 61.0%
D2 high residues 338-405
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.71 59.0 5.99e-01 92.6% 92.6%
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.71 52.0 5.13e-01 92.6% 73.0%
3bqkA02 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.70 40.0 3.02e-01 73.5% 25.2%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.67 56.0 5.06e-01 91.2% 84.8%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.64 53.0 4.94e-01 91.2% 82.1%
1o5hA00 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.63 51.0 3.64e-01 88.2% 52.5%
6t4hA03 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.63 54.0 4.06e-01 97.1% 87.2%
3p4tA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.62 51.0 3.99e-01 91.2% 65.3%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 38.0 4.09e-01 76.5% 73.2%
8hk0B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 50.0 4.01e-01 91.2% 63.0%
3gn4A00 6.10.220.10 Special › Helix non-globular › Helical scaffold and wing domains of SecA › 0.61 50.0 4.03e-01 89.7% 48.8%
4x28C03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 49.0 3.89e-01 91.2% 67.1%
1egdA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 46.0 3.66e-01 83.8% 71.6%
1ivhA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 46.0 3.69e-01 86.8% 70.2%
3havB02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.59 48.0 3.49e-01 92.6% 69.2%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.58 49.0 5.04e-01 95.6% 95.5%
1ks9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 49.0 4.11e-01 97.1% 78.0%
1e7uA05 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.57 40.0 3.06e-01 77.9% 85.3%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 37.0 3.25e-01 70.6% 73.6%
2p0tA01 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.54 41.0 4.02e-01 85.3% 93.4%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 43.0 3.51e-01 88.2% 64.2%
1pw4A01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.54 45.0 3.31e-01 100.0% 57.4%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 39.0 3.89e-01 76.5% 90.0%
1c20A00 1.10.150.60 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain 0.53 37.0 3.11e-01 98.5% 39.1%
8sbeA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.53 41.0 3.14e-01 88.2% 85.6%
4hfvA01 1.20.1440.330 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.53 44.0 3.77e-01 95.6% 85.5%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.53 40.0 3.94e-01 88.2% 92.3%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 44.0 3.51e-01 100.0% 92.0%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 42.0 4.15e-01 92.6% 82.7%
2lhiA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 39.0 2.96e-01 83.8% 92.0%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.51 42.0 2.60e-01 100.0% 60.7%
5zjgA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.51 40.0 3.48e-01 88.2% 77.7%
1s2xA00 1.20.190.30 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ 0.51 35.0 2.58e-01 72.1% 57.8%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3231388 103.4.1.3 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Med15_N 0.68 55.0 5.51e-01 89.7% 92.9%
3428408 632.2.1.30 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › Auxin_canalis 0.68 54.0 5.33e-01 89.7% 81.3%
3783885 1128.1.1.2 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.66 59.0 5.74e-01 98.5% 92.0%
5062669 632.23.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.66 54.0 5.30e-01 88.2% 91.8%
5061323 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.65 51.0 5.28e-01 83.8% 92.3%
4944817 620.1.1.0 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases 0.64 55.0 4.30e-01 100.0% 55.1%
4070925 4044.1.1.1 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.64 52.0 4.96e-01 91.2% 87.5%
4034094 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.64 49.0 3.59e-01 83.8% 77.9%
3716897 183.1.1.0 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.63 44.0 4.29e-01 77.9% 66.7%
3909150 5063.1.1.15 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › OCIA 0.60 41.0 3.98e-01 70.6% 65.3%
3714703 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.59 39.0 3.41e-01 89.7% 46.0%
5053013 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.59 48.0 3.58e-01 92.6% 80.0%
5012473 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 35.0 2.96e-01 100.0% 37.3%
4953123 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.57 39.0 2.41e-01 70.6% 12.5%
3178452 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 34.0 3.52e-01 85.3% 63.1%
3381959 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.57 44.0 3.52e-01 86.8% 55.9%
5082532 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 42.0 4.19e-01 86.8% 77.1%
3998355 190.1.1.25 alpha arrays › HMG-box-like › HMG-box › HMG-box › PF29135 0.56 39.0 3.89e-01 75.0% 97.1%
5039649 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 45.0 3.75e-01 89.7% 95.8%
3837293 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 40.0 4.09e-01 80.9% 81.5%
3957615 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.55 41.0 3.74e-01 88.2% 71.4%
3821975 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.54 36.0 3.62e-01 76.5% 67.1%
4540538 5059.1.1.17 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TMEM234 0.54 39.0 3.16e-01 75.0% 97.6%
3270380 5059.1.1.17 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TMEM234 0.54 39.0 3.13e-01 75.0% 95.3%
5053357 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.54 44.0 3.55e-01 97.1% 60.0%
5059281 141.1.1.0 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases 0.53 42.0 2.93e-01 91.2% 51.0%
3512966 604.27.1.0 alpha bundles › Spectrin repeat-like › Triple-helical domain in insecticidal protein Cry1Ac › Triple-helical domain in insecticidal protein Cry1Ac 0.53 44.0 4.39e-01 91.2% 87.1%
3492168 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 38.0 2.83e-01 91.2% 27.0%
3797019 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 41.0 2.79e-01 94.1% 66.3%
3346760 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.51 44.0 3.52e-01 97.1% 68.1%
3858057 101.42.1.1 alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins › HTH_SUN2 0.50 32.0 3.15e-01 79.4% 58.7%
D3 medium residues 197-275
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04233.20 best Phage_Mu_F 40.8 4.70e-10 86.1% 50.0%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 39.0 3.78e-01 93.7% 57.1%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.60 43.0 4.65e-01 93.7% 92.4%
1gsaA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.59 39.0 4.22e-01 91.1% 83.1%
1t8rA01 3.30.1730.10 Alpha Beta › 2-Layer Sandwich › amp nucleosidase, domain 1 › AMP nucleoside phosphorylase, N-terminal domain 0.59 51.0 4.18e-01 98.7% 88.1%
4n3tA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.57 43.0 3.58e-01 83.5% 98.0%
2kr7A01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 43.0 4.09e-01 83.5% 90.4%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.56 37.0 3.55e-01 92.4% 58.2%
1o07A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 42.0 2.84e-01 88.6% 92.4%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 3.66e-01 86.1% 100.0%
3s98A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.53e-01 93.7% 64.6%
5mz2I00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.53 42.0 3.55e-01 93.7% 49.6%
4qd4A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 43.0 2.88e-01 92.4% 91.9%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.53 34.0 3.10e-01 82.3% 46.8%
2n99A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 33.0 3.42e-01 81.0% 65.8%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.91e-01 97.5% 68.6%
2efpA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.52 38.0 3.59e-01 78.5% 79.6%
4dt4A01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 37.0 3.74e-01 75.9% 100.0%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.39e-01 94.9% 55.7%
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.52 41.0 3.77e-01 93.7% 64.8%
7xc8A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.52 42.0 3.78e-01 91.1% 69.0%
3vbhC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.18e-01 100.0% 73.1%
2olsA01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 41.0 3.24e-01 92.4% 45.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964369 6108.1.1.8 alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Phage_Mu_F 0.86 67.0 4.59e-01 93.7% 26.0%
4032640 601.19.1.3 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F 0.85 65.0 4.19e-01 93.7% 20.3%
3946757 601.19.1.3 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F 0.79 60.0 4.26e-01 91.1% 28.4%
4675879 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 47.0 3.32e-01 94.9% 31.3%
1069946 219.1.1.52 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Tae4 0.56 37.0 2.96e-01 92.4% 32.5%
3839466 284.1.1.1 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.54 41.0 3.85e-01 86.1% 84.8%
3515390 284.1.1.1 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.53 43.0 3.86e-01 91.1% 85.2%
3435513 284.1.1.1 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.53 43.0 3.50e-01 91.1% 93.1%
4048983 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.53 44.0 4.07e-01 93.7% 78.1%
3895076 284.1.1.1 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.52 43.0 3.85e-01 97.5% 84.0%
3784080 10.32.1.24 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PITH 0.52 43.0 3.33e-01 98.7% 62.0%
3748151 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 41.0 3.36e-01 93.7% 46.0%
3385644 284.1.1.1 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.51 42.0 3.63e-01 93.7% 66.4%
3966652 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.51 41.0 3.43e-01 92.4% 64.0%
3223789 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 41.0 3.63e-01 92.4% 80.8%
None 0.50 39.0 3.62e-01 88.6% 82.7%
3328892 284.1.1.1 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.50 40.0 3.44e-01 89.9% 74.8%