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EU770222.1__ACF05176.1__PREDATOR_79__00079

Bact-Vir

EU770222.1__ACF05176.1__PREDATOR_79__00079

Identity

Accession:
EU770222 ↗
Kingdom:
phage

Quality

79.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Predatorvirus› Mycobacterium_phage_Predator

TaxID: 543153

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-233
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.78 56.0 6.51e-01 94.7% 99.4%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.72 50.0 5.96e-01 88.9% 100.0%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.65 40.0 5.00e-01 89.4% 100.0%
4dkwA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.63 46.0 4.93e-01 97.8% 86.1%
4jc0A03 3.30.750.200 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.57 25.0 3.35e-01 82.3% 74.2%
3jy6A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 31.0 3.95e-01 99.1% 93.0%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 28.0 3.47e-01 96.0% 78.0%
2p9bA03 3.40.50.10910 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Amidohydrolase 0.54 25.0 3.29e-01 85.8% 78.2%
5mn7A01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.52 30.0 3.42e-01 71.2% 73.9%
3slrA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 43.0 4.37e-01 98.7% 90.3%
3s28A04 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 31.0 3.10e-01 82.7% 56.8%
2yhwA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 36.0 4.10e-01 70.8% 98.8%
3b85A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 29.0 3.22e-01 81.4% 66.3%
3ghfA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.50 22.0 3.21e-01 85.8% 91.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4292358 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.79 54.0 6.28e-01 88.9% 93.3%
3308941 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 57.0 5.99e-01 92.9% 84.9%
3511625 2484.1.1.72 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF 0.72 52.0 5.54e-01 89.8% 82.5%
4096365 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.71 47.0 5.70e-01 89.4% 100.0%
4117581 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.69 43.0 5.41e-01 93.4% 100.0%
3457302 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.69 47.0 5.40e-01 99.1% 91.8%
3180133 2484.1.1.57 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt 0.69 61.0 5.80e-01 92.9% 94.2%
3720313 2484.1.1.57 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt 0.67 60.0 5.58e-01 92.9% 96.0%
3631030 2484.1.1.57 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt 0.66 59.0 5.49e-01 92.9% 96.7%
3178498 2484.1.1.57 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt 0.66 59.0 5.31e-01 92.9% 86.1%
3737089 2484.1.1.57 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt 0.65 59.0 5.98e-01 99.1% 97.7%
4017838 2484.1.1.57 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt 0.62 58.0 5.56e-01 100.0% 97.3%
3962458 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.61 29.0 3.66e-01 95.1% 73.3%
3173173 2484.1.1.57 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt 0.61 57.0 5.19e-01 100.0% 87.5%
5066347 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 39.0 4.71e-01 92.5% 98.0%
5079107 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 36.0 4.54e-01 70.4% 100.0%
5044375 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.59 51.0 5.02e-01 88.9% 95.7%
4299491 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 30.0 3.63e-01 88.1% 71.3%
4666966 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 35.0 4.42e-01 76.1% 97.8%
4985983 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.57 28.0 3.47e-01 88.5% 73.4%
1406486 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 28.0 3.47e-01 96.0% 78.0%
3601536 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 30.0 3.49e-01 71.2% 74.5%
3203047 2006.1.4.29 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN-like_DDX60 0.52 35.0 3.60e-01 89.4% 70.5%