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EU855793.1__ACI00403.1__X__00043

Bact-Vir

EU855793.1__ACI00403.1__X__00043

Identity

Accession:
EU855793 ↗
Kingdom:
phage

Quality

78.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Listeria_phage_P40

TaxID: 560178

Cluster

View cluster (41 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-63
PDB
Domain cluster: rep: MZ605292.1__QYW06518.1__uan_106__00106__D53-98
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.84 67.0 5.96e-01 100.0% 62.3%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 69.0 7.30e-01 100.0% 100.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 65.0 6.38e-01 100.0% 79.0%
4ii1A01 2.30.30.1190 Mainly Beta › Roll › SH3 type barrels. › 0.77 70.0 6.21e-01 100.0% 90.0%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.77 61.0 6.12e-01 100.0% 84.5%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.75 67.0 4.89e-01 100.0% 49.7%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.73 66.0 4.84e-01 100.0% 50.0%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.72 67.0 5.28e-01 100.0% 52.3%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.72 65.0 6.02e-01 100.0% 98.6%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.72 63.0 4.98e-01 100.0% 59.7%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.71e-01 100.0% 97.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 5.00e-01 100.0% 82.5%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.63 51.0 4.06e-01 91.2% 43.0%
4glkA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.63 52.0 3.90e-01 100.0% 58.2%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.63 49.0 3.52e-01 89.5% 50.0%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 53.0 3.98e-01 100.0% 68.8%
3k25A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 49.0 3.16e-01 93.0% 45.8%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 52.0 4.12e-01 100.0% 66.9%
7jiuA03 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.59 48.0 3.75e-01 93.0% 50.7%
4b0bB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 49.0 3.51e-01 93.0% 67.5%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 48.0 3.79e-01 94.7% 81.1%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 48.0 3.75e-01 93.0% 86.7%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 49.0 3.86e-01 94.7% 90.3%
2jn9A01 2.40.30.80 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YkvR-like 0.58 44.0 3.95e-01 89.5% 97.8%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 48.0 3.66e-01 100.0% 84.8%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 48.0 3.50e-01 100.0% 79.2%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 47.0 3.45e-01 100.0% 76.9%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 48.0 3.62e-01 100.0% 82.7%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 49.0 3.91e-01 100.0% 68.3%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 51.0 4.26e-01 100.0% 60.6%
1ejeA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 3.34e-01 100.0% 76.0%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 3.45e-01 100.0% 87.2%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 47.0 3.62e-01 100.0% 71.6%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 3.51e-01 94.7% 80.0%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 46.0 3.42e-01 100.0% 80.1%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.44e-01 100.0% 83.1%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.49e-01 100.0% 82.2%
3abiA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 43.0 3.15e-01 91.2% 44.1%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 44.0 3.29e-01 100.0% 73.2%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 45.0 3.40e-01 100.0% 82.1%
3qx3B03 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 39.0 3.31e-01 80.7% 66.0%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.36e-01 94.7% 76.4%
4wrnA02 2.60.40.3210 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain 0.53 40.0 3.37e-01 86.0% 84.8%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 43.0 3.08e-01 100.0% 92.2%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 39.0 3.27e-01 89.5% 72.9%
4i14A02 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.50 36.0 2.94e-01 78.9% 78.6%
2furB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 41.0 2.99e-01 100.0% 93.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.95 70.0 5.74e-01 100.0% 46.3%
3684646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.93 73.0 6.38e-01 100.0% 58.7%
3463181 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.92 69.0 6.39e-01 100.0% 64.3%
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.91 76.0 7.50e-01 100.0% 83.3%
3936430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.91 69.0 6.02e-01 100.0% 56.2%
3429682 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.91 68.0 6.15e-01 100.0% 60.0%
3393360 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.89 67.0 5.15e-01 100.0% 39.1%
3830083 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.89 72.0 5.30e-01 100.0% 36.3%
4025829 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.89 71.0 7.23e-01 100.0% 87.3%
3486271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.89 69.0 5.82e-01 100.0% 52.2%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.89 65.0 6.95e-01 100.0% 88.0%
3622055 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.88 66.0 5.66e-01 100.0% 52.9%
3251559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 71.0 7.61e-01 100.0% 98.0%
3389311 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 67.0 5.41e-01 100.0% 46.0%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.87 71.0 5.44e-01 100.0% 42.6%
3433070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 64.0 5.93e-01 100.0% 63.8%
3612184 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 65.0 6.40e-01 100.0% 75.0%
3389161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 64.0 5.30e-01 100.0% 47.4%
3302817 4.1.1.362 ↗ beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2, KOW7_SPT5 0.84 66.0 5.16e-01 100.0% 43.1%
3349135 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 77.0 6.51e-01 100.0% 66.7%
4999430 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.83 66.0 5.10e-01 100.0% 40.8%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.82 72.0 6.84e-01 100.0% 81.5%
1263152 4.1.1.27 ↗ beta barrels › SH3 › SH3 › SH3 › NHase_beta_C 0.81 75.0 6.04e-01 100.0% 83.2%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.80 69.0 6.59e-01 100.0% 81.5%
3989485 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.78 59.0 6.25e-01 100.0% 92.0%
5020252 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.75 58.0 4.48e-01 100.0% 39.2%
None — 0.72 63.0 4.02e-01 100.0% 23.4%
3923766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 65.0 5.09e-01 100.0% 67.8%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.54e-01 100.0% 80.0%
2561577 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.70 52.0 5.12e-01 100.0% 75.4%
3721062 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.69 62.0 5.40e-01 100.0% 77.6%
3591306 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 5.82e-01 100.0% 88.6%
3212772 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 58.0 5.35e-01 100.0% 74.3%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.67 58.0 5.20e-01 100.0% 68.8%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 58.0 5.17e-01 100.0% 78.8%
3814098 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.67 59.0 5.08e-01 100.0% 74.4%
3937006 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.16e-01 100.0% 87.2%
5031673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 4.61e-01 100.0% 66.7%
3990085 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 4.32e-01 100.0% 70.0%
3853596 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.63 56.0 4.30e-01 100.0% 71.5%
4017600 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 53.0 3.22e-01 96.5% 26.8%
1102692 206.1.1.30 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kinase-like 0.60 53.0 3.26e-01 100.0% 23.1%
3415959 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.60 49.0 4.24e-01 94.7% 76.8%
3472532 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 51.0 3.90e-01 100.0% 80.0%
5028251 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.59 52.0 4.22e-01 100.0% 86.4%
4883064 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.57 43.0 2.86e-01 82.5% 87.7%
3220256 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 49.0 3.88e-01 100.0% 89.4%
3457651 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 41.0 2.73e-01 87.7% 31.3%
4981706 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.55 44.0 3.35e-01 93.0% 81.8%
1844144 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.55 45.0 3.39e-01 100.0% 80.6%
4962621 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.55 44.0 3.44e-01 94.7% 84.3%
3914314 804.1.1.3 ↗ a+b four layers › Hypothetical protein YwqG › Hypothetical protein YwqG › Hypothetical protein YwqG › PDCD2_C, PF30657 0.54 45.0 3.08e-01 94.7% 83.3%
3629665 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.54 37.0 3.90e-01 71.9% 87.8%
5043252 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.54 45.0 3.31e-01 100.0% 80.6%
3391479 804.1.1.3 ↗ a+b four layers › Hypothetical protein YwqG › Hypothetical protein YwqG › Hypothetical protein YwqG › PDCD2_C, PF30657 0.54 44.0 3.09e-01 94.7% 82.3%
3237220 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.54 47.0 3.78e-01 100.0% 73.9%
4947401 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 44.0 3.30e-01 94.7% 81.9%
5071939 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.53 42.0 3.18e-01 93.0% 84.9%
3385776 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 43.0 3.36e-01 94.7% 76.3%
4997723 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.52 42.0 3.15e-01 94.7% 81.9%
4163756 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.51 40.0 3.45e-01 100.0% 53.7%