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EU876853.1__ACG60331.1__phiPLPE_09__00009

Bact-Vir

EU876853.1__ACG60331.1__phiPLPE_09__00009

Identity

Accession:
EU876853 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Iodovirus› Iodobacter_phage_PhiPLPE

TaxID: 551895

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-72
PDB
Domain cluster: rep: OQ756160.1__WHM53144.1__XAP3_0047__00047__D9-80
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 49.0 4.04e-01 96.9% 45.2%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.62 47.0 3.27e-01 84.4% 83.3%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.84e-01 92.2% 92.6%
4rudA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.59 38.0 3.96e-01 100.0% 72.4%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 50.0 3.51e-01 96.9% 29.9%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 41.0 2.80e-01 75.0% 73.0%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 44.0 4.36e-01 95.3% 79.1%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.57 48.0 3.24e-01 100.0% 47.1%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.57 42.0 4.62e-01 95.3% 100.0%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 42.0 3.34e-01 84.4% 65.4%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 49.0 4.13e-01 95.3% 66.7%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.70e-01 96.9% 92.3%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.56 40.0 3.39e-01 76.6% 67.6%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 40.0 3.33e-01 82.8% 66.4%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 48.0 3.61e-01 98.4% 41.1%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.19e-01 78.1% 87.1%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.54 45.0 3.88e-01 96.9% 93.6%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.54 47.0 3.40e-01 100.0% 44.0%
2rovA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.79e-01 98.4% 82.9%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 48.0 3.63e-01 98.4% 42.0%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.39e-01 95.3% 57.7%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.53 43.0 3.54e-01 93.8% 54.3%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 46.0 3.38e-01 98.4% 50.0%
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.52 45.0 3.71e-01 95.3% 68.8%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 2.89e-01 76.6% 59.2%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.51 42.0 2.90e-01 95.3% 26.0%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.51 45.0 4.13e-01 98.4% 86.6%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 37.0 3.56e-01 95.3% 68.5%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 41.0 4.12e-01 95.3% 89.1%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.51 36.0 3.14e-01 78.1% 67.3%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 42.0 3.81e-01 100.0% 96.8%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 40.0 4.17e-01 96.9% 98.2%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.50 41.0 3.18e-01 95.3% 42.2%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3592269 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 56.0 4.46e-01 96.9% 83.7%
3414950 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 55.0 4.60e-01 95.3% 73.0%
3924581 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.61 51.0 4.58e-01 96.9% 66.7%
3213645 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.61 50.0 3.43e-01 93.8% 98.8%
3220497 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.60 46.0 3.20e-01 100.0% 24.5%
3235213 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 49.0 4.02e-01 96.9% 81.5%
3476221 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.59 48.0 2.91e-01 93.8% 14.8%
4011994 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 50.0 4.25e-01 96.9% 60.9%
3174357 4027.1.1.0 ↗ beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit 0.59 40.0 4.30e-01 95.3% 83.6%
55 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.58 50.0 3.55e-01 96.9% 31.4%
5000378 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.58 50.0 4.24e-01 100.0% 94.8%
4956474 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.58 50.0 4.89e-01 96.9% 90.0%
3499649 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.58 47.0 4.29e-01 93.8% 80.0%
3564421 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.95e-01 95.3% 79.1%
3831275 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 46.0 2.99e-01 93.8% 100.0%
3182025 4.1.1.475 ↗ beta barrels › SH3 › SH3 › SH3 › PF26640 0.56 48.0 3.77e-01 96.9% 49.6%
4944012 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 40.0 3.42e-01 79.7% 80.9%
7410 219.1.1.64 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PMT_C3 0.54 47.0 3.40e-01 100.0% 44.3%
3521217 1.1.5.34 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_oxidase_2 0.54 48.0 3.49e-01 98.4% 43.4%
3232413 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.54 42.0 3.10e-01 96.9% 30.6%
3432014 9.1.1.34 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.53 43.0 3.40e-01 100.0% 67.1%
3850937 4004.1.1.10 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › PI3K_1B_p101 0.53 46.0 3.37e-01 98.4% 97.8%
3750837 4004.1.1.0 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.53 45.0 3.36e-01 98.4% 97.8%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 40.0 4.09e-01 93.8% 88.3%
3907134 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.53 44.0 3.10e-01 100.0% 27.7%
3632407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 44.0 3.72e-01 100.0% 77.8%
4942529 876.1.1.10 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF1015 0.52 43.0 3.04e-01 93.8% 52.1%
3260733 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.52 42.0 3.68e-01 96.9% 77.3%
5061293 219.1.1.77 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF3335 0.52 44.0 3.08e-01 96.9% 30.2%
3273083 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 41.0 3.64e-01 96.9% 58.9%
4847775 2487.1.1.12 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ZNRF_3_ecto 0.52 43.0 3.27e-01 93.8% 98.1%
3394223 11.1.1.229 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IRK_C 0.51 42.0 3.19e-01 95.3% 40.6%
3287779 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 35.0 2.45e-01 75.0% 80.4%
3233461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 41.0 4.22e-01 95.3% 95.0%
3436557 220.4.1.8 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › ZGRF1-like_N 0.50 40.0 3.86e-01 93.8% 98.7%
D2 high residues 74-126
PDB
Domain cluster: representative