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EU876853.1__ACG60365.1__phiPLPE_43__00043
Bact-VirEU876853.1__ACG60365.1__phiPLPE_43__00043
Identity
- Accession:
- EU876853 ↗
- Kingdom:
- phage
Quality
84.7
mean pLDDT
Taxonomy
TaxID: 551895
Cluster
View cluster (247 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 38-116
Domain cluster:
rep: LC625742.1__BCU41230.1__X__00055__D20-104
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pp6A02 | 2.40.10.210 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) | 0.80 | 57.0 | 6.33e-01 | 96.2% | 92.1% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 38.0 | 4.11e-01 | 96.2% | 64.6% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.67 | 56.0 | 5.61e-01 | 98.7% | 89.9% |
| 4paaA05 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.65 | 42.0 | 4.26e-01 | 81.0% | 65.8% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 38.0 | 4.07e-01 | 96.2% | 66.7% |
| 3fawA01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 46.0 | 4.38e-01 | 93.7% | 64.1% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.64 | 54.0 | 4.77e-01 | 97.5% | 63.2% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.64 | 43.0 | 4.21e-01 | 92.4% | 64.0% |
| 1vw3C01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.63 | 55.0 | 4.66e-01 | 97.5% | 58.8% |
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.62 | 57.0 | 4.98e-01 | 100.0% | 85.2% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 34.0 | 3.54e-01 | 94.9% | 56.0% |
| 4bhqA00 | 3.30.70.2830 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 52.0 | 4.73e-01 | 94.9% | 81.7% |
| 1jj2L00 | 3.40.1120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal protein L15e › Ribosomal protein L15 | 0.60 | 48.0 | 3.71e-01 | 91.1% | 51.5% |
| 2e8yA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 42.0 | 3.97e-01 | 93.7% | 59.4% |
| 4labA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.59 | 41.0 | 3.16e-01 | 91.1% | 31.0% |
| 5fcrC02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 52.0 | 4.69e-01 | 98.7% | 72.9% |
| 3k67A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 39.0 | 3.20e-01 | 70.9% | 75.0% |
| 3h2bB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 45.0 | 3.37e-01 | 84.8% | 82.1% |
| 3kmuA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 46.0 | 4.47e-01 | 91.1% | 79.3% |
| 6fexA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 46.0 | 4.34e-01 | 91.1% | 83.8% |
| 4pioA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 43.0 | 3.31e-01 | 81.0% | 90.1% |
| 1wxrA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 49.0 | 3.48e-01 | 100.0% | 73.9% |
| 3i87A02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.57 | 45.0 | 4.29e-01 | 91.1% | 76.5% |
| 2kcaA00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.56 | 47.0 | 4.35e-01 | 98.7% | 78.9% |
| 4dqlB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 47.0 | 4.28e-01 | 98.7% | 78.9% |
| 3wx7A02 | 2.10.10.90 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.54 | 32.0 | 3.08e-01 | 96.2% | 49.5% |
| 7uvpA03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.54 | 44.0 | 3.62e-01 | 89.9% | 76.6% |
| 3ttgA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.54 | 42.0 | 2.87e-01 | 89.9% | 47.2% |
| 7v6bA01 | 3.30.160.380 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain | 0.54 | 39.0 | 3.49e-01 | 77.2% | 78.9% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 41.0 | 4.30e-01 | 92.4% | 91.8% |
| 2w59A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 41.0 | 3.87e-01 | 91.1% | 69.0% |
| 1hxmB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.99e-01 | 92.4% | 74.3% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.52 | 45.0 | 4.14e-01 | 100.0% | 79.8% |
| 1zboA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.51 | 45.0 | 4.00e-01 | 98.7% | 78.8% |
| 2mn5A00 | 3.30.30.140 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.51 | 34.0 | 3.80e-01 | 97.5% | 96.4% |
| 4o2hA00 | 3.10.450.610 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 43.0 | 3.67e-01 | 96.2% | 76.6% |
| 2p3hA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.50 | 40.0 | 3.74e-01 | 87.3% | 99.0% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4669352 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.84 | 74.0 | 6.53e-01 | 100.0% | 67.3% |
| 3587815 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.80 | 74.0 | 6.64e-01 | 100.0% | 85.7% |
| 4032900 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.78 | 72.0 | 6.51e-01 | 100.0% | 89.5% |
| 5078808 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.75 | 66.0 | 6.33e-01 | 96.2% | 87.8% |
| 4602848 | 1.1.7.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding | 0.74 | 53.0 | 5.08e-01 | 94.9% | 65.6% |
| 4596341 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.71 | 51.0 | 4.81e-01 | 94.9% | 63.2% |
| 3386643 | 1.1.7.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding | 0.69 | 52.0 | 4.72e-01 | 97.5% | 60.0% |
| 3271700 | 1.1.7.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN | 0.69 | 54.0 | 5.19e-01 | 96.2% | 74.4% |
| 3216247 | 1.1.7.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN | 0.68 | 55.0 | 5.30e-01 | 94.9% | 76.7% |
| 185291 | 1.1.13.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 | 0.68 | 57.0 | 5.70e-01 | 100.0% | 90.0% |
| 4944155 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.67 | 44.0 | 3.45e-01 | 91.1% | 34.2% |
| 2642578 | 1.1.13.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join | 0.67 | 61.0 | 5.45e-01 | 100.0% | 84.5% |
| 3237074 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.67 | 53.0 | 4.60e-01 | 87.3% | 86.4% |
| 3744064 | 1.1.7.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN | 0.67 | 52.0 | 4.98e-01 | 96.2% | 73.3% |
| 4178356 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.67 | 44.0 | 4.27e-01 | 92.4% | 60.0% |
| 4260208 | 1.1.13.62 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 | 0.65 | 59.0 | 5.34e-01 | 98.7% | 96.2% |
| 4278681 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.65 | 43.0 | 4.26e-01 | 92.4% | 63.5% |
| 3489129 | 11.1.1.233 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_mannosidase | 0.65 | 54.0 | 4.86e-01 | 92.4% | 70.9% |
| 4316228 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.64 | 44.0 | 4.02e-01 | 94.9% | 53.3% |
| 4943119 | 304.109.1.3 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L15e | 0.64 | 51.0 | 3.82e-01 | 88.6% | 48.5% |
| 4144850 | 11.1.1.1257 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29761 | 0.63 | 46.0 | 4.28e-01 | 93.7% | 61.0% |
| 5001586 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 47.0 | 4.55e-01 | 96.2% | 71.1% |
| 4154363 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.63 | 51.0 | 4.40e-01 | 96.2% | 55.4% |
| 4085735 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.63 | 46.0 | 4.44e-01 | 96.2% | 68.9% |
| 3595114 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 54.0 | 4.90e-01 | 96.2% | 75.2% |
| 1117873 | 310.3.1.5 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN_bio_d | 0.62 | 52.0 | 4.74e-01 | 94.9% | 78.9% |
| 3756492 | 913.1.1.1 ↗ | few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › HRM | 0.61 | 35.0 | 3.43e-01 | 91.1% | 48.9% |
| 5042402 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.61 | 43.0 | 4.77e-01 | 89.9% | 96.7% |
| 868875 | 304.54.1.1 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC | 0.61 | 50.0 | 4.28e-01 | 92.4% | 61.2% |
| 3511361 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.60 | 49.0 | 5.11e-01 | 92.4% | 100.0% |
| 3986531 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.60 | 41.0 | 3.44e-01 | 74.7% | 40.7% |
| 5029768 | 304.109.1.3 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L15e | 0.60 | 48.0 | 3.69e-01 | 91.1% | 51.3% |
| 3510228 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.59 | 51.0 | 3.88e-01 | 100.0% | 74.6% |
| 4889079 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.58 | 42.0 | 3.84e-01 | 75.9% | 61.3% |
| 5013284 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.58 | 42.0 | 4.31e-01 | 92.4% | 80.0% |
| 3236112 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.58 | 39.0 | 3.31e-01 | 70.9% | 77.8% |
| 3885552 | 319.1.1.5 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS | 0.57 | 48.0 | 4.47e-01 | 92.4% | 97.0% |
| 3274538 | 11.1.1.698 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 | 0.56 | 41.0 | 4.03e-01 | 93.7% | 72.9% |
| 119197 | 1.1.13.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join | 0.56 | 47.0 | 4.35e-01 | 98.7% | 78.9% |
| 3266787 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 41.0 | 4.07e-01 | 92.4% | 75.3% |
| 3289002 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.55 | 39.0 | 2.62e-01 | 89.9% | 17.4% |
| 5023429 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.55 | 43.0 | 3.06e-01 | 87.3% | 52.3% |
| 3594114 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.55 | 44.0 | 4.01e-01 | 91.1% | 96.4% |
| 4473668 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.55 | 37.0 | 3.02e-01 | 89.9% | 33.5% |
| 3277508 | 11.1.1.793 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 | 0.55 | 41.0 | 3.81e-01 | 92.4% | 64.0% |
| 4494608 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.54 | 40.0 | 3.75e-01 | 92.4% | 63.0% |
| 3508879 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.54 | 44.0 | 3.50e-01 | 94.9% | 86.5% |
| 3432327 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.65e-01 | 92.4% | 63.1% |
| 3575159 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.67e-01 | 91.1% | 64.8% |
| 3990569 | 11.1.1.842 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C | 0.50 | 41.0 | 3.42e-01 | 91.1% | 62.1% |
| 3284879 | 884.1.1.1 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C | 0.50 | 34.0 | 3.29e-01 | 100.0% | 61.1% |
| 3525036 | 58.1.1.1 ↗ | beta barrels › Oncogene product-like › Oncogene products › Oncogene products › TCL1_MTCP1 | 0.50 | 43.0 | 3.85e-01 | 96.2% | 95.7% |