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EU876853.1__ACG60376.1__phiPLPE_54__00054
Bact-VirEU876853.1__ACG60376.1__phiPLPE_54__00054
Identity
- Accession:
- EU876853 ↗
- Kingdom:
- phage
Quality
92.2
mean pLDDT
Taxonomy
TaxID: 551895
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-70
Domain cluster:
rep: OR050627.1__WIC41441.1__MA9V1_177__00177__D2-79
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.78 | 46.0 | 4.28e-01 | 100.0% | 50.0% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 44.0 | 4.06e-01 | 100.0% | 50.0% |
| 3s98A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 43.0 | 3.83e-01 | 100.0% | 45.3% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.64 | 44.0 | 4.92e-01 | 100.0% | 94.0% |
| 2hn1A01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.64 | 41.0 | 3.20e-01 | 100.0% | 29.6% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 42.0 | 3.96e-01 | 100.0% | 56.2% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.62 | 44.0 | 4.46e-01 | 100.0% | 74.2% |
| 6hj2A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.61 | 44.0 | 2.99e-01 | 78.5% | 75.2% |
| 8h68A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.60 | 40.0 | 2.82e-01 | 100.0% | 20.5% |
| 2ww8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 40.0 | 3.45e-01 | 100.0% | 42.5% |
| 2e4tA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 39.0 | 3.20e-01 | 98.5% | 35.5% |
| 2pn5A03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 42.0 | 3.67e-01 | 100.0% | 48.6% |
| 2k2dA00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.57 | 32.0 | 3.61e-01 | 100.0% | 74.5% |
| 3gb0A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 51.0 | 4.23e-01 | 100.0% | 97.3% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.57 | 39.0 | 3.79e-01 | 100.0% | 63.2% |
| 1txoB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.56 | 48.0 | 3.28e-01 | 95.4% | 85.2% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 40.0 | 3.53e-01 | 100.0% | 51.0% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.56 | 42.0 | 3.57e-01 | 100.0% | 48.6% |
| 2zuoA09 | 2.30.30.570 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 43.0 | 4.37e-01 | 100.0% | 87.3% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 42.0 | 3.77e-01 | 100.0% | 60.4% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 37.0 | 4.12e-01 | 100.0% | 98.0% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 44.0 | 3.76e-01 | 100.0% | 56.0% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 37.0 | 4.10e-01 | 98.5% | 98.0% |
| 4lr4A02 | 2.60.120.1430 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 37.0 | 2.80e-01 | 100.0% | 29.2% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.52 | 40.0 | 3.26e-01 | 87.7% | 85.0% |
| 2wyqA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 41.0 | 3.93e-01 | 90.8% | 94.8% |
| 1xmbA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 45.0 | 3.88e-01 | 100.0% | 91.1% |
| 3ihpA03 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 43.0 | 2.77e-01 | 100.0% | 31.0% |
| 3kopA00 | 2.40.100.20 | Mainly Beta › Beta Barrel › Cyclophilin › | 0.50 | 43.0 | 3.30e-01 | 98.5% | 100.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995672 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.74 | 50.0 | 5.59e-01 | 100.0% | 92.0% |
| 3958897 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.73 | 48.0 | 3.95e-01 | 100.0% | 37.5% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.72 | 47.0 | 5.45e-01 | 100.0% | 97.8% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.72 | 47.0 | 5.42e-01 | 100.0% | 97.8% |
| 5059024 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.71 | 46.0 | 4.10e-01 | 100.0% | 47.8% |
| 4463006 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.71 | 45.0 | 5.38e-01 | 95.4% | 95.6% |
| 5047755 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.67 | 47.0 | 3.68e-01 | 96.9% | 35.0% |
| 3488321 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 44.0 | 3.51e-01 | 100.0% | 34.6% |
| 3969578 | 3268.1.1.0 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase | 0.65 | 39.0 | 4.21e-01 | 98.5% | 70.9% |
| 3595896 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.65 | 39.0 | 4.51e-01 | 100.0% | 88.9% |
| 5078886 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.64 | 41.0 | 3.46e-01 | 100.0% | 38.2% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 53.0 | 4.85e-01 | 100.0% | 69.9% |
| 3760983 | 3335.1.1.3 ↗ | beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › KCTD18_C | 0.61 | 52.0 | 4.60e-01 | 100.0% | 100.0% |
| 3954522 | 3108.1.1.0 ↗ | a+b two layers › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 | 0.61 | 52.0 | 5.10e-01 | 96.9% | 92.9% |
| 3574971 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.60 | 40.0 | 4.48e-01 | 100.0% | 90.0% |
| 3929391 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.60 | 52.0 | 4.46e-01 | 100.0% | 76.4% |
| 3392943 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.59 | 45.0 | 3.48e-01 | 100.0% | 37.2% |
| 3256398 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 44.0 | 3.87e-01 | 98.5% | 54.7% |
| 3929359 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.59 | 51.0 | 4.35e-01 | 100.0% | 72.5% |
| 3928432 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.58 | 51.0 | 4.47e-01 | 100.0% | 81.0% |
| 3216812 | 382.1.1.20 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29036 | 0.58 | 48.0 | 4.37e-01 | 100.0% | 68.2% |
| 4210294 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.58 | 44.0 | 3.76e-01 | 100.0% | 50.5% |
| 5057274 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 38.0 | 3.57e-01 | 98.5% | 54.1% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.57 | 40.0 | 4.38e-01 | 100.0% | 100.0% |
| 4502838 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.57 | 41.0 | 3.78e-01 | 76.9% | 92.9% |
| 3704667 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.56 | 47.0 | 3.02e-01 | 100.0% | 18.2% |
| 5037842 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.56 | 48.0 | 3.21e-01 | 96.9% | 78.5% |
| 3674426 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.56 | 49.0 | 3.43e-01 | 100.0% | 34.4% |
| 4558763 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.56 | 42.0 | 3.46e-01 | 86.2% | 87.4% |
| 3494162 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 3.75e-01 | 100.0% | 51.3% |
| 3389065 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 41.0 | 3.54e-01 | 84.6% | 87.3% |
| 3599827 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 3.39e-01 | 100.0% | 37.7% |
| 4161260 | 7056.1.1.3 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT | 0.53 | 34.0 | 3.83e-01 | 100.0% | 95.6% |
| 3496352 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 45.0 | 3.75e-01 | 100.0% | 62.5% |
| 3551231 | 221.1.1.87 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 | 0.52 | 39.0 | 3.42e-01 | 84.6% | 89.5% |
| 4990489 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 37.0 | 4.07e-01 | 98.5% | 100.0% |
| 4032123 | 4112.1.1.1 ↗ | beta duplicates or obligate multimers › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX | 0.51 | 35.0 | 3.59e-01 | 98.5% | 76.7% |
| 3285474 | 223.3.1.8 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 | 0.51 | 45.0 | 3.08e-01 | 100.0% | 81.5% |
| 3941016 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 43.0 | 3.50e-01 | 100.0% | 57.0% |
| 4927303 | 525.1.1.1 ↗ | a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma | 0.50 | 43.0 | 3.61e-01 | 100.0% | 87.5% |
| 3897763 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 38.0 | 3.30e-01 | 84.6% | 52.7% |
| 3575366 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.50 | 39.0 | 3.48e-01 | 86.2% | 92.6% |