←Back to structures

EU876853.1__ACG60396.1__phiPLPE_74__00074

Bact-Vir

EU876853.1__ACG60396.1__phiPLPE_74__00074

Identity

Accession:
EU876853 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Iodovirus› Iodobacter_phage_PhiPLPE

TaxID: 551895

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-63
PDB
Domain cluster: rep: KU160664.1__ALY10223.1__SALGADO_57__00057__D80-129
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fm4B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.84 78.0 6.32e-01 100.0% 81.2%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 64.0 5.57e-01 100.0% 56.5%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 63.0 6.27e-01 100.0% 80.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 64.0 6.74e-01 100.0% 94.1%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 62.0 5.40e-01 100.0% 55.3%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 60.0 6.17e-01 100.0% 83.9%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 64.0 6.64e-01 100.0% 94.3%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 59.0 4.92e-01 100.0% 47.0%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 58.0 4.74e-01 100.0% 44.2%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 58.0 5.38e-01 100.0% 64.4%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 5.53e-01 100.0% 69.0%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 59.0 5.70e-01 100.0% 76.6%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 56.0 6.06e-01 100.0% 97.9%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 55.0 5.41e-01 100.0% 73.0%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 54.0 4.80e-01 100.0% 56.2%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 65.0 6.03e-01 100.0% 81.1%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 5.51e-01 100.0% 91.7%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 60.0 5.88e-01 100.0% 84.4%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 64.0 6.19e-01 100.0% 89.4%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 63.0 5.80e-01 100.0% 76.0%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 63.0 6.01e-01 100.0% 91.2%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 5.74e-01 98.3% 80.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 62.0 6.07e-01 100.0% 92.2%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 59.0 5.86e-01 100.0% 90.0%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.38e-01 100.0% 74.3%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 57.0 5.90e-01 100.0% 98.2%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.94e-01 100.0% 94.9%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 58.0 5.48e-01 100.0% 80.0%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 59.0 4.72e-01 100.0% 59.7%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 60.0 5.91e-01 100.0% 93.4%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 59.0 5.66e-01 100.0% 91.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 55.0 5.27e-01 100.0% 79.4%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.67e-01 100.0% 90.3%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.71e-01 100.0% 93.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 57.0 5.73e-01 100.0% 98.3%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 5.66e-01 100.0% 96.6%
1vwxB03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.64 45.0 3.51e-01 74.1% 100.0%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 4.43e-01 100.0% 50.0%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 5.51e-01 100.0% 98.2%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.63 52.0 4.44e-01 100.0% 56.0%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 53.0 5.37e-01 94.8% 100.0%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.56e-01 91.4% 95.5%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 44.0 4.38e-01 84.5% 77.0%
2k78A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 49.0 3.93e-01 100.0% 89.7%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 49.0 3.05e-01 100.0% 96.8%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.60e-01 91.4% 74.2%
1db3A02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.55 41.0 3.38e-01 82.8% 75.9%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.46e-01 91.4% 92.2%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 45.0 3.47e-01 100.0% 59.0%
3npfA03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 45.0 3.29e-01 100.0% 36.6%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.69e-01 100.0% 81.6%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3256431 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.90 65.0 5.74e-01 98.3% 55.0%
5036498 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.88 69.0 6.24e-01 100.0% 64.0%
3328489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 69.0 6.40e-01 100.0% 68.6%
3924379 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 65.0 6.35e-01 100.0% 73.0%
3877938 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 62.0 5.31e-01 100.0% 52.2%
2106277 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.81 62.0 4.76e-01 100.0% 37.9%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 62.0 5.18e-01 100.0% 49.5%
3868320 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.81 60.0 5.81e-01 100.0% 70.8%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.80 59.0 5.72e-01 100.0% 70.8%
3231263 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.79 59.0 6.34e-01 100.0% 92.0%
3671396 4.1.1.316 ↗ beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.79 65.0 5.94e-01 100.0% 69.9%
3547102 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 60.0 5.20e-01 100.0% 55.3%
3879068 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 59.0 5.17e-01 100.0% 55.3%
3502388 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 59.0 5.40e-01 100.0% 62.7%
3547093 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 59.0 5.04e-01 100.0% 52.2%
3768095 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 59.0 4.93e-01 100.0% 49.5%
3274551 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 58.0 5.35e-01 100.0% 62.7%
3628131 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 59.0 4.91e-01 100.0% 48.0%
3535268 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 58.0 4.91e-01 100.0% 49.5%
3571064 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 58.0 5.10e-01 100.0% 55.3%
3496659 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 58.0 5.75e-01 100.0% 78.3%
3407820 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 55.0 4.87e-01 100.0% 52.9%
3596676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 58.0 4.93e-01 100.0% 52.2%
3395948 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.76 57.0 5.90e-01 100.0% 85.5%
3535298 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 58.0 5.01e-01 100.0% 53.3%
3881121 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 57.0 4.76e-01 100.0% 47.0%
4483091 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 67.0 5.52e-01 100.0% 62.9%
3592540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 57.0 5.68e-01 100.0% 78.3%
None — 0.76 67.0 4.22e-01 100.0% 23.4%
3920726 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 57.0 4.74e-01 100.0% 47.0%
3407827 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 54.0 4.77e-01 100.0% 52.9%
3241067 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 60.0 4.81e-01 100.0% 46.4%
3561094 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 67.0 6.15e-01 100.0% 81.3%
4929875 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.74 57.0 4.76e-01 100.0% 49.0%
3592541 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 58.0 5.17e-01 100.0% 61.3%
3879132 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 67.0 6.11e-01 100.0% 81.3%
3600929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 66.0 5.77e-01 100.0% 72.9%
3826751 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 65.0 5.82e-01 100.0% 72.5%
3407853 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 53.0 4.57e-01 100.0% 50.0%
3373583 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 66.0 6.19e-01 100.0% 82.9%
3171604 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 66.0 6.03e-01 100.0% 86.7%
3710893 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 4.99e-01 100.0% 52.3%
3849311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 64.0 6.37e-01 100.0% 93.3%
3707929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 65.0 4.66e-01 100.0% 42.5%
4026193 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 65.0 5.68e-01 100.0% 91.8%
3815495 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.72 62.0 5.86e-01 100.0% 80.0%
3374228 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 6.17e-01 100.0% 91.7%
3908017 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.71 64.0 5.72e-01 100.0% 72.5%
160765 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 62.0 5.71e-01 100.0% 81.8%
3797602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 61.0 5.77e-01 98.3% 98.6%
3786978 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 63.0 5.96e-01 100.0% 95.7%
3448327 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.71 64.0 6.00e-01 100.0% 87.1%
3834563 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 63.0 5.67e-01 100.0% 73.8%
3607307 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 62.0 5.86e-01 100.0% 87.1%
3583921 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 60.0 5.69e-01 98.3% 98.6%
2990058 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.70 62.0 4.00e-01 100.0% 25.5%
3581631 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 63.0 6.04e-01 100.0% 90.8%
3218201 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 5.58e-01 100.0% 91.3%
3512419 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 62.0 5.44e-01 100.0% 68.2%
3937006 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 5.59e-01 100.0% 87.2%
3633434 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 59.0 5.60e-01 100.0% 80.0%
3920103 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 60.0 5.11e-01 100.0% 62.2%
3338134 4.1.1.155 ↗ beta barrels › SH3 › SH3 › SH3 › CRR42-like 0.68 62.0 5.66e-01 100.0% 84.0%
3810560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 58.0 5.55e-01 100.0% 91.4%
3290564 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.67 60.0 5.18e-01 100.0% 72.2%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.28e-01 100.0% 80.0%
3789233 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 58.0 5.61e-01 100.0% 86.2%
3416133 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 58.0 5.31e-01 100.0% 74.7%
3170649 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 59.0 5.21e-01 100.0% 84.7%
4020093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 3.74e-01 79.3% 65.2%
3594811 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.63e-01 100.0% 98.5%
3890893 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 56.0 5.74e-01 96.6% 100.0%
3743973 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 58.0 5.24e-01 100.0% 72.5%
3846212 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 56.0 5.02e-01 100.0% 70.0%
3243559 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.64 50.0 4.27e-01 87.9% 84.0%
3323474 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.62 54.0 4.75e-01 100.0% 65.6%
4387111 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 53.0 4.88e-01 100.0% 81.2%
3808070 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 45.0 3.60e-01 93.1% 58.5%
4028425 220.1.1.286 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERLI1 0.56 47.0 3.70e-01 96.6% 76.9%
3593276 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 3.84e-01 100.0% 63.2%
3700022 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.55 48.0 3.99e-01 100.0% 71.4%
3605177 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.55 48.0 3.84e-01 100.0% 65.8%