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EU982300.1__ACH86130.1__X__00006

Bact-Vir

EU982300.1__ACH86130.1__X__00006

Identity

Accession:
EU982300 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_DVM-2008

TaxID: 557989

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 147-270
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14859.11 best Colicin_M 236.0 6.70e-70 100.0% 44.5%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fzlA02 3.30.450.400 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Colicin M, catalytic domain 0.87 80.0 7.43e-01 100.0% 79.6%
2xmxA02 3.30.450.400 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Colicin M, catalytic domain 0.80 73.0 7.24e-01 100.0% 93.1%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.67 40.0 4.35e-01 99.2% 70.5%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.62 38.0 3.48e-01 86.3% 45.2%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 33.0 2.96e-01 87.9% 39.4%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 29.0 3.53e-01 87.1% 77.3%
1usuB00 3.15.10.20 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain 0.51 39.0 3.85e-01 81.5% 95.5%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.51 30.0 3.48e-01 82.3% 86.4%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1005588 3173.1.1.1 ↗ a+b complex topology › Colicin M-related › Colicin M-related › Colicin M-related › Colicin_M 0.91 86.0 6.32e-01 100.0% 42.8%
1933280 3173.1.1.1 ↗ a+b complex topology › Colicin M-related › Colicin M-related › Colicin M-related › Colicin_M 0.88 73.0 6.48e-01 100.0% 62.9%
231543 3173.1.1.1 ↗ a+b complex topology › Colicin M-related › Colicin M-related › Colicin M-related › Colicin_M 0.87 81.0 6.03e-01 100.0% 44.0%
146951 3173.1.1.1 ↗ a+b complex topology › Colicin M-related › Colicin M-related › Colicin M-related › Colicin_M 0.80 73.0 5.58e-01 100.0% 44.8%
4017051 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.63 41.0 3.94e-01 97.6% 57.9%
3285746 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.55 40.0 3.72e-01 75.0% 66.5%
5045102 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 32.0 3.59e-01 94.4% 78.9%
3326287 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.53 35.0 3.64e-01 86.3% 70.8%
4014368 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.51 40.0 3.69e-01 82.3% 82.5%
D2 medium residues 1-117
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14859.11 best Colicin_M 190.9 3.50e-56 99.2% 44.1%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5zr4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 38.0 4.08e-01 87.2% 75.5%
6i2mB02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.53 43.0 4.25e-01 85.5% 97.5%
4azsA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 43.0 4.02e-01 92.3% 89.4%
5tj3A01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.50 43.0 3.05e-01 96.6% 37.8%
1kz7A01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.50 34.0 2.96e-01 70.1% 78.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4591229 190.1.1.8 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › NUT 0.61 32.0 3.53e-01 84.6% 61.1%
3169920 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.59 43.0 4.46e-01 82.9% 82.7%
3906599 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 41.0 4.20e-01 88.0% 80.9%
4149276 167.1.1.1 ↗ alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.54 40.0 3.61e-01 76.9% 90.3%
3285015 191.1.1.23 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_22 0.53 41.0 4.08e-01 82.1% 90.4%
4017101 148.1.3.212 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_13 0.53 36.0 4.07e-01 80.3% 95.3%
3507403 109.4.1.158 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERAP1_C 0.52 42.0 3.07e-01 85.5% 57.4%