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EXON0

Euk-Vir

Operophtera_brumata_nucleopolyhedrovirus

EXON0__YP_009552566__Operophtera_brumata_nucleopolyhedrovirus__1046267

Identity

Accession:
YP_009552566 ↗
Protein ID:
EXON0
Kingdom:
euk

Quality

72.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Operophtera_brumata_nucleopolyhedrovirus

TaxID: 1046267

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-171
PDB
Domain cluster: rep: ie-0__YP_009186708__Sucra_jujuba_nucleopolyhedrovirus__1563660__D21-191
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05290.18 best Baculo_IE-1 42.3 1.10e-10 45.0% 50.3%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fwvA02 1.20.120.1680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.68 33.0 3.74e-01 90.1% 59.0%
2pfdA03 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.68 47.0 4.47e-01 71.3% 88.2%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.60 37.0 3.88e-01 98.8% 66.5%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.59 28.0 4.04e-01 95.3% 100.0%
2q12A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.57 36.0 3.15e-01 98.8% 43.4%
1yz5B00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.56 39.0 3.54e-01 70.2% 54.6%
4gyvE00 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.56 41.0 3.79e-01 74.9% 87.9%
1txdA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.55 50.0 4.52e-01 97.1% 74.9%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.55 34.0 4.13e-01 100.0% 94.6%
7csoA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.54 48.0 4.41e-01 94.2% 73.6%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.54 48.0 4.98e-01 94.2% 99.4%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.52 36.0 3.50e-01 71.3% 100.0%
4mt0A01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.51 42.0 3.27e-01 87.1% 76.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3593383 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 51.0 3.84e-01 73.1% 36.8%
3696767 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.70 54.0 4.01e-01 79.5% 66.5%
3610231 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 43.0 5.07e-01 87.7% 90.0%
3390061 5063.1.1.22 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › LIN9_C 0.68 44.0 5.30e-01 80.1% 100.0%
3350101 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.66 48.0 5.21e-01 74.3% 92.4%
3788234 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.65 55.0 4.02e-01 90.1% 84.1%
4024848 192.29.1.139 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TRAM_LAG1_CLN8 0.65 45.0 3.75e-01 70.8% 74.8%
5050430 109.32.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Alkylsulfatase SdsA1 linker domain › Alkylsulfatase SdsA1 linker domain › Alkyl_sulf_dimr 0.65 33.0 4.14e-01 73.1% 79.0%
4958131 109.10.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Translin › Translin 0.65 45.0 4.30e-01 71.3% 79.5%
4940650 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.64 33.0 3.74e-01 100.0% 63.7%
3721366 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.63 53.0 3.99e-01 90.1% 84.0%
3630684 4177.1.1.2 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.61 38.0 3.51e-01 99.4% 48.8%
3639843 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 43.0 3.16e-01 76.0% 27.6%
3609189 192.29.1.19 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Cornichon 0.59 45.0 4.43e-01 78.9% 81.0%
3397305 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.59 34.0 2.83e-01 77.2% 33.8%
4389261 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.58 34.0 4.41e-01 79.5% 100.0%
4886424 304.116.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF 0.57 34.0 4.36e-01 78.9% 100.0%
3634070 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.56 50.0 4.41e-01 94.7% 66.7%
3584415 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.55 40.0 3.97e-01 85.4% 69.2%
4612374 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.55 29.0 4.08e-01 72.5% 100.0%
4025267 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.54 42.0 3.74e-01 79.5% 85.8%
None — 0.54 41.0 4.15e-01 78.9% 97.1%
3735913 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.52 41.0 3.32e-01 80.7% 70.3%
4530342 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.52 31.0 3.93e-01 78.9% 97.1%
4026984 141.1.1.3 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.51 44.0 3.53e-01 91.8% 84.2%
4974664 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.51 35.0 4.15e-01 97.7% 100.0%
3733697 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.51 45.0 3.26e-01 94.2% 59.6%
D2 medium residues 176-236
PDB
Domain cluster: rep: IE-0__YP_008378369__Choristoneura_rosaceana_nucleopolyhedrovirus__58094__D186-240
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05290.18 best Baculo_IE-1 38.9 1.10e-09 100.0% 36.2%