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Entry_fusion_IMV_membrane_protein

Euk-Vir

Sea_otter_poxvirus

Entry_fusion_IMV_membrane_protein__YP_009480602__Sea_otter_poxvirus__1416741

Identity

Accession:
YP_009480602 ↗
Protein ID:
Entry_fusion_IMV_membrane_protein
Kingdom:
euk

Quality

76.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Mustelpoxvirus› Sea_otter_poxvirus

TaxID: 1416741

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-132
PDB
Domain cluster: rep: IMV_membrane_protein__YP_784284__Nile_crocodilepox_virus__1285600__D73-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04872.20 best Pox_L5 73.7 1.20e-20 100.0% 76.9%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r31A01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.60 53.0 5.19e-01 100.0% 93.9%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 46.0 3.98e-01 88.3% 87.3%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 46.0 4.70e-01 100.0% 93.1%
3vwcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 42.0 3.30e-01 85.0% 85.6%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.87e-01 100.0% 67.6%
3d31A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 4.25e-01 93.3% 97.8%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 39.0 3.50e-01 81.7% 70.2%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 44.0 3.11e-01 100.0% 42.5%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.52 43.0 3.71e-01 100.0% 91.4%
4jocA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 35.0 2.22e-01 71.7% 94.9%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 40.0 3.91e-01 93.3% 78.3%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 40.0 3.45e-01 93.3% 80.6%
3s24A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.49e-01 88.3% 86.2%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 37.0 3.11e-01 83.3% 86.1%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.51 38.0 3.17e-01 85.0% 81.4%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 2.95e-01 100.0% 36.6%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 42.0 3.47e-01 100.0% 70.5%
1b12A02 2.170.230.10 Mainly Beta › Beta Complex › Signal Peptidase I; Chain: A, domain 2 › 0.50 37.0 3.56e-01 85.0% 100.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4593898 2.1.1.16 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.70 51.0 3.80e-01 93.3% 30.3%
5082134 2002.1.1.43 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.61 49.0 3.38e-01 90.0% 96.8%
3739513 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.59 52.0 3.49e-01 100.0% 25.8%
3180298 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.59 49.0 3.23e-01 100.0% 22.7%
4505174 327.8.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GSPII protein E N-terminal domain-like › GSPII protein E N-terminal domain-like 0.58 41.0 4.00e-01 73.3% 100.0%
4985754 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 36.0 3.16e-01 90.0% 40.0%
4012965 4351.1.1.0 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like 0.58 47.0 3.23e-01 96.7% 25.6%
3759716 358.2.1.1 ↗ a+b complex topology › SRCR-like › A heparin-binding domain › A heparin-binding domain › APP_N 0.56 46.0 4.02e-01 95.0% 97.9%
3618014 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.55 33.0 3.62e-01 80.0% 77.8%
3618015 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.54 34.0 3.76e-01 90.0% 86.7%
302672 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 41.0 2.65e-01 91.7% 26.2%
3931418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 32.0 3.21e-01 100.0% 60.0%
3332667 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 39.0 2.55e-01 88.3% 95.4%
3963789 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.51 43.0 3.51e-01 98.3% 76.7%
4201013 244.1.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.50 42.0 2.64e-01 100.0% 30.5%