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Env

Euk-Vir

Puma_feline_foamy_virus

Env__YP_009508538__Puma_feline_foamy_virus__2169894

Identity

Accession:
YP_009508538 ↗
Protein ID:
Env
Kingdom:
euk

Quality

53.2 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Retroviridae› Felispumavirus› Puma_feline_foamy_virus

TaxID: 2169894

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 138-160_654-677_708-775
PDB
D2 medium residues 161-213_678-707
PDB
D3 medium residues 214-242_308-400_490-543
PDB
D4 medium residues 243-307_430-467
PDB
D5 medium residues 776-839
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03408.21 best Foamy_virus_ENV 102.3 2.50e-29 100.0% 6.4%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t1wA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 44.0 4.00e-01 79.7% 98.9%
3a35A02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 41.0 3.66e-01 70.3% 72.8%
2dn7A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.77e-01 78.1% 86.0%
1x5fA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.63e-01 78.1% 79.2%
4n5uA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 42.0 3.70e-01 78.1% 89.8%
3mxlA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.59 42.0 3.61e-01 75.0% 89.4%
2kwaA00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 41.0 3.59e-01 73.4% 88.1%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.58 45.0 3.52e-01 82.8% 59.0%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 3.59e-01 76.6% 99.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.58 43.0 3.34e-01 79.7% 91.4%
1dn0D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 3.83e-01 81.2% 100.0%
4n68A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.69e-01 79.7% 96.0%
2ee3A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.48e-01 76.6% 81.5%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.57 34.0 2.90e-01 75.0% 37.9%
1wh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 40.0 3.41e-01 76.6% 63.1%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 3.43e-01 78.1% 84.8%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.55 42.0 3.07e-01 81.2% 62.6%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 38.0 3.63e-01 71.9% 63.2%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 38.0 2.50e-01 75.0% 73.9%
7qrlA01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.54 37.0 2.95e-01 71.9% 65.9%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.54 39.0 3.08e-01 79.7% 49.3%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.53 35.0 2.99e-01 73.4% 42.6%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.16e-01 78.1% 74.6%
2gu1A03 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.52 35.0 2.80e-01 70.3% 86.4%
4fekB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 37.0 2.55e-01 78.1% 54.0%
4aqzA00 2.60.40.3470 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 2.98e-01 78.1% 60.1%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 37.0 2.74e-01 78.1% 30.9%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951751 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 49.0 4.75e-01 78.1% 96.0%
3996785 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.66 49.0 3.69e-01 79.7% 91.3%
3345838 5.1.4.258 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.64 50.0 3.17e-01 84.4% 24.2%
3909795 11.1.1.129 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind 0.64 45.0 3.99e-01 76.6% 100.0%
3222982 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.60 43.0 3.41e-01 79.7% 96.0%
5022726 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 40.0 4.43e-01 73.4% 88.0%
4942269 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 43.0 3.83e-01 79.7% 94.0%
3344767 241.6.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.59 40.0 3.27e-01 70.3% 72.0%
3615185 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 43.0 2.63e-01 79.7% 88.3%
3175033 4086.1.1.1 ↗ a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.57 40.0 3.60e-01 73.4% 55.6%
5060010 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 33.0 3.78e-01 76.6% 80.0%
3414029 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.57 46.0 2.91e-01 90.6% 27.4%
3721942 4086.1.1.1 ↗ a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.57 40.0 3.40e-01 73.4% 47.6%
3722450 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.57 42.0 3.25e-01 79.7% 62.1%
5030187 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.56 41.0 3.89e-01 78.1% 96.2%
3786425 241.6.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc 0.56 38.0 3.09e-01 70.3% 73.1%
4213219 109.21.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain 0.56 46.0 2.69e-01 100.0% 35.0%
3288859 295.1.1.27 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.56 38.0 3.82e-01 71.9% 73.8%
3792948 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 3.33e-01 76.6% 90.9%
3197023 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.53 40.0 2.52e-01 82.8% 33.5%
3517016 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 36.0 2.32e-01 71.9% 77.7%
145216 4086.1.1.1 ↗ a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.53 39.0 3.40e-01 90.6% 50.0%
3247407 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.53 38.0 3.12e-01 78.1% 66.4%
4219508 109.21.1.4 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C,Sec16 0.52 39.0 2.38e-01 81.2% 81.0%
3788776 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.51 40.0 2.56e-01 85.9% 31.9%
3939128 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.36e-01 85.9% 85.5%
5056110 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 34.0 2.73e-01 70.3% 47.4%
4026643 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 33.0 3.04e-01 70.3% 50.6%
4976853 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.50 34.0 2.81e-01 70.3% 65.0%
3248970 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.50 37.0 3.18e-01 81.2% 50.0%
3882163 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 34.0 2.34e-01 71.9% 18.0%
3940562 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.50 37.0 2.37e-01 81.2% 37.2%