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ExoD_superfamily_incomplete_domain

Euk-Vir

Pandoravirus_salinus

ExoD_superfamily_incomplete_domain__YP_008436830__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008436830 ↗
Protein ID:
ExoD_superfamily_incomplete_domain
Kingdom:
euk

Quality

75.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 59-147
PDB
Domain cluster: rep: hypothetical_protein_pdul_cds_137__YP_008318726__Pandoravirus_dulcis__1349409__D48-141
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jbjA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 51.0 4.78e-01 100.0% 63.6%
2vqeL00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 52.0 4.58e-01 100.0% 56.5%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 50.0 4.91e-01 100.0% 74.0%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 52.0 5.08e-01 100.0% 78.4%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 48.0 5.01e-01 100.0% 87.8%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 50.0 4.54e-01 100.0% 62.9%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 44.0 4.61e-01 98.9% 81.5%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.61 44.0 4.76e-01 100.0% 91.9%
1o7iB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 47.0 4.39e-01 100.0% 64.9%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 53.0 4.99e-01 100.0% 82.7%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 3.85e-01 96.6% 57.8%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 35.0 3.30e-01 96.6% 48.6%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 38.0 4.18e-01 83.1% 84.3%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 37.0 3.91e-01 80.9% 73.1%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 34.0 3.66e-01 86.5% 69.7%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 51.0 4.74e-01 100.0% 80.2%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 39.0 4.33e-01 84.3% 94.1%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 31.0 3.43e-01 95.5% 67.6%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 42.0 2.75e-01 93.3% 19.3%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.53 33.0 3.91e-01 84.3% 98.2%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 35.0 3.22e-01 95.5% 50.0%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 36.0 4.04e-01 86.5% 92.8%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 42.0 4.10e-01 87.6% 93.1%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 37.0 4.04e-01 91.0% 91.5%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 42.0 3.69e-01 93.3% 90.8%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.51 42.0 3.63e-01 94.4% 68.9%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.50 37.0 3.51e-01 80.9% 64.7%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 3.24e-01 97.8% 55.1%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929844 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.78 70.0 6.99e-01 100.0% 95.6%
4937519 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.77 69.0 6.23e-01 100.0% 72.5%
3326221 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 67.0 6.59e-01 100.0% 93.7%
3307397 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 67.0 5.69e-01 100.0% 63.6%
3268888 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.71 55.0 5.57e-01 100.0% 83.3%
1000222 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.70 52.0 5.14e-01 98.9% 75.0%
4004698 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.69 54.0 5.77e-01 100.0% 98.7%
4943942 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 53.0 5.06e-01 100.0% 70.5%
4958552 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 47.0 4.35e-01 87.6% 56.5%
4974918 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.66 53.0 5.00e-01 100.0% 72.4%
5028505 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.66 55.0 4.65e-01 100.0% 56.4%
3603237 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 51.0 4.84e-01 100.0% 70.5%
4882592 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.65 54.0 4.56e-01 100.0% 54.1%
3642408 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 50.0 4.29e-01 100.0% 51.0%
4940587 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 51.0 4.79e-01 100.0% 70.0%
3670182 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.64 52.0 4.61e-01 92.1% 61.6%
5054824 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 50.0 4.58e-01 100.0% 65.2%
5036293 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 49.0 4.77e-01 100.0% 74.0%
3716709 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 57.0 5.08e-01 100.0% 74.0%
3601108 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 52.0 5.00e-01 100.0% 81.0%
3287503 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.60 51.0 4.49e-01 100.0% 63.0%
4137219 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.59 52.0 5.07e-01 100.0% 90.0%
3612689 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 52.0 4.91e-01 100.0% 90.9%
3710314 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 51.0 4.31e-01 100.0% 64.1%
3678038 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.56 44.0 4.69e-01 94.4% 100.0%
5074611 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.56 41.0 4.28e-01 84.3% 87.5%
1549576 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.56 52.0 4.44e-01 100.0% 65.0%
5071482 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 47.0 4.24e-01 93.3% 93.6%
162823 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.56 45.0 4.20e-01 91.0% 94.0%
3587268 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 50.0 4.52e-01 100.0% 87.5%
4225693 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.55 43.0 4.00e-01 100.0% 64.2%
4024527 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.55 44.0 2.95e-01 88.8% 46.8%
3958663 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.53 40.0 3.24e-01 80.9% 55.6%
3174953 69.1.1.2 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.53 43.0 3.22e-01 88.8% 35.8%
3741777 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 46.0 4.09e-01 98.9% 99.3%
3958888 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 40.0 3.42e-01 87.6% 47.7%
4942348 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.53 42.0 3.78e-01 86.5% 84.8%
3373621 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 43.0 4.53e-01 94.4% 98.8%
4031371 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.53 44.0 3.83e-01 93.3% 90.0%
3880705 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.52 45.0 4.06e-01 97.8% 93.6%
3881440 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 43.0 3.92e-01 93.3% 92.8%
3590584 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 43.0 3.81e-01 93.3% 88.9%
3587514 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.51 40.0 3.53e-01 97.8% 56.2%
324821 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 43.0 3.79e-01 94.4% 98.5%
1871052 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.50 42.0 3.38e-01 95.5% 54.3%
3282839 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.50 34.0 3.23e-01 73.0% 57.3%