Exonuclease_YqaJ

Euk-Vir

Pandoravirus_salinus

Exonuclease_YqaJ__YP_008436959__Pandoravirus_salinus__1349410

Identity

72.3 mean pLDDT

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 98-113_295-378

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6h9xA01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.66	41.0	4.08e-01	93.0%	60.8%
2fcwA00	1.20.81.10	Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain	0.65	41.0	4.06e-01	73.0%	60.4%
2mgyA01	1.20.1260.100	Mainly Alpha › Up-down Bundle › Ferritin › TspO/MBR protein	0.59	36.0	3.10e-01	73.0%	38.1%
6t4hA03	1.10.3060.10	Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA	0.55	43.0	3.60e-01	83.0%	76.2%
3fgaB00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.53	37.0	2.51e-01	100.0%	18.1%
6v3zA00	1.20.141.10	Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1	0.52	36.0	3.04e-01	73.0%	88.8%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4016635	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.59	40.0	4.08e-01	92.0%	70.0%
3898757	109.4.1.3331 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BROMI_N	0.58	53.0	4.58e-01	100.0%	92.9%
3598168	3755.1.1.0 ↗	alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related	0.58	41.0	3.46e-01	94.0%	44.2%
3575083	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.56	42.0	4.30e-01	80.0%	99.0%
3458938	605.1.1.135 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PF30754	0.55	39.0	4.22e-01	90.0%	85.9%
3713159	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.52	48.0	4.49e-01	100.0%	92.5%

D2 medium residues 114-174

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3262255	2008.1.1.50 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ	0.72	59.0	4.28e-01	95.1%	32.0%

D3 medium residues 175-294

PDB

Domain cluster: rep: YqaJ-like_viral_recombinase__YP_009165300__Mollivirus_sibericum_Viruses.__X__D104-223