Exonuclease

Euk-Vir

Murid_betaherpesvirus_1

Exonuclease__YP_214099__Murid_betaherpesvirus_1__10366

Identity

83.6 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Muromegalovirus› Murid_betaherpesvirus_1

TaxID: 10366

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-186

PDB

Domain cluster: rep: GP98__YP_007417864__Caviid_betaherpesvirus_2__33706__D55-187

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	30.9	1.70e-07	91.0%	19.3%

D2 medium residues 221-282_429-473_511-556

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	48.3	9.00e-13	41.2%	13.5%
PF01771.24	Viral_alk_exo	46.2	4.00e-12	32.7%	9.5%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3lsgA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.54	21.0	3.26e-01	73.2%	94.5%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4385471	3636.1.1.0 ↗	a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain	0.53	41.0	4.15e-01	80.4%	84.0%
3505390	3636.1.1.0 ↗	a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain	0.52	40.0	3.99e-01	79.7%	78.1%

D3 medium residues 283-393_414-428_474-510

PDB

Domain cluster: rep: deoxyribonuclease__YP_009137086__Human_alphaherpesvirus_1__10298__D357-507_527-540

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	90.1	1.90e-25	69.9%	23.9%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1fi8C00	2.60.40.550	Mainly Beta › Sandwich › Immunoglobulin-like › Ecotin	0.60	23.0	3.29e-01	100.0%	73.1%
1wmhA00	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.54	27.0	3.54e-01	98.2%	90.4%
2vqeC02	3.30.1140.32	Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain	0.51	30.0	3.69e-01	96.3%	95.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
182718	2008.1.1.2 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Viral_alk_exo	0.84	81.0	5.65e-01	100.0%	43.1%
4505078	4178.1.1.1 ↗	beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110	0.53	33.0	3.81e-01	92.0%	86.1%
3529887	11.1.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3	0.51	25.0	3.18e-01	96.9%	80.0%
3453549	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.50	31.0	3.59e-01	98.8%	86.1%