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F-box_containing_protein

Euk-Vir

Brazilian_marseillevirus

F-box_containing_protein__YP_009238519__Brazilian_marseillevirus__1813599

Identity

Accession:
YP_009238519 ↗
Protein ID:
F-box_containing_protein
Kingdom:
euk

Quality

78.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

Cluster

View cluster (25 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 81-213
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mufA01 2.20.110.10 Mainly Beta › Single Sheet › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 0.68 52.0 5.66e-01 80.5% 100.0%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.57 39.0 3.76e-01 71.4% 78.2%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.56 51.0 3.26e-01 100.0% 65.8%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 35.0 3.54e-01 73.7% 64.1%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 43.0 4.22e-01 92.5% 95.0%
3db2B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 36.0 3.24e-01 75.9% 60.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965839 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.69 57.0 5.44e-01 87.2% 75.5%
4029170 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.69 48.0 5.38e-01 71.4% 94.0%
3976807 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.68 56.0 4.69e-01 87.2% 55.5%
3386526 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.67 56.0 5.16e-01 87.2% 84.2%
3968348 77.2.1.5 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN_2 0.67 55.0 5.21e-01 88.0% 74.4%
3976809 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.66 56.0 5.04e-01 88.7% 69.7%
3760058 77.2.1.4 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN+SET7_N 0.66 58.0 5.56e-01 100.0% 84.0%
3599618 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.65 47.0 3.99e-01 88.0% 45.5%
4050277 77.2.1.4 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN+SET7_N 0.64 58.0 5.28e-01 100.0% 74.9%
3311784 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.63 46.0 4.76e-01 100.0% 80.0%
4107854 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.63 48.0 5.28e-01 83.5% 100.0%
3591979 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.62 57.0 5.42e-01 100.0% 85.2%
4024499 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.62 51.0 4.90e-01 89.5% 76.7%
3772693 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.62 57.0 4.88e-01 100.0% 81.4%
3718320 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.62 49.0 3.82e-01 89.5% 38.0%
2723017 3894.1.1.0 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain 0.62 46.0 4.80e-01 89.5% 85.5%
3706026 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.61 56.0 4.84e-01 100.0% 83.9%
3287702 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.61 49.0 5.27e-01 85.7% 98.3%
3858437 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.61 51.0 4.49e-01 89.5% 66.7%
3719280 3523.1.1.4 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › MORN 0.61 55.0 3.57e-01 100.0% 35.8%
3253682 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.60 49.0 4.74e-01 88.0% 76.7%
3610069 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.60 49.0 4.20e-01 87.2% 65.1%
3592336 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.60 49.0 5.13e-01 91.0% 95.8%
3607876 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.60 49.0 3.73e-01 87.2% 50.0%
3714740 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.60 48.0 5.09e-01 86.5% 95.8%
3605869 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.59 53.0 4.27e-01 98.5% 59.2%
3708791 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.59 54.0 4.60e-01 100.0% 63.3%
3601033 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.59 46.0 4.52e-01 88.7% 75.9%
3890448 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.59 48.0 5.04e-01 87.2% 98.3%
3609818 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.58 48.0 4.11e-01 87.2% 64.8%
3611492 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.58 48.0 3.77e-01 87.2% 50.0%
3701923 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.58 47.0 4.83e-01 88.0% 91.2%
3595247 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.58 47.0 4.81e-01 88.7% 89.2%
4308299 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.58 49.0 4.84e-01 93.2% 87.6%
3600949 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.58 47.0 4.73e-01 89.5% 85.9%
3612462 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.57 45.0 4.83e-01 88.0% 98.3%
3844285 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.57 52.0 4.97e-01 100.0% 89.7%
3728626 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.56 45.0 4.69e-01 86.5% 92.5%
3598915 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.56 46.0 4.47e-01 88.7% 88.7%
1780243 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.55 44.0 3.65e-01 95.5% 46.0%
3867103 3417.1.1.1 ↗ a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS 0.55 40.0 4.51e-01 76.7% 100.0%
4292366 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.54 43.0 3.84e-01 82.7% 71.2%
4030599 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.54 46.0 4.51e-01 94.0% 86.0%
3616219 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.52 44.0 4.46e-01 99.2% 90.4%
3588413 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.51 39.0 3.76e-01 80.5% 85.2%
3213945 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.51 45.0 3.34e-01 98.5% 51.8%
3167601 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.51 33.0 3.89e-01 75.9% 93.7%
3567966 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.50 34.0 3.85e-01 70.7% 95.8%
D2 medium residues 1-80
PDB
Domain cluster: rep: F-box_containing_protein__YP_003406790__Marseillevirus_marseillevirus__694581__D53-120
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 25.5 1.20e-05 56.2% 66.0%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y79101 1.10.1370.40 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.51 43.0 2.84e-01 100.0% 84.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3643098 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 45.0 5.39e-01 91.3% 76.4%
3347634 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.81 44.0 5.68e-01 88.7% 95.6%
3616135 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.80 45.0 5.00e-01 90.0% 69.2%
3678716 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 56.0 6.02e-01 91.3% 87.1%
3881666 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 46.0 4.94e-01 90.0% 75.7%
3443498 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 60.0 5.93e-01 91.3% 90.6%
3464778 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 59.0 5.81e-01 91.3% 88.2%
3439829 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 51.0 4.94e-01 90.0% 71.1%
3698257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 53.0 5.33e-01 96.2% 83.7%
3324307 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.64 45.0 4.89e-01 91.3% 89.2%
3204329 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 53.0 4.80e-01 90.0% 84.8%
3436360 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.62 52.0 4.83e-01 90.0% 94.0%
3202188 207.1.1.309 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_15 0.62 57.0 3.48e-01 100.0% 35.8%
3999567 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.62 53.0 5.08e-01 95.0% 81.1%
3347793 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.61 52.0 5.42e-01 98.8% 98.7%
3807195 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.60 44.0 4.66e-01 90.0% 87.1%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.60 51.0 5.12e-01 91.3% 92.5%
3848693 145.1.1.37 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_2, F-box-like, Kelch_3, Kelch_KLHDC2_KLHL20_DRC7 0.60 53.0 3.38e-01 98.8% 92.2%
3309148 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.60 54.0 3.69e-01 100.0% 58.2%
4012180 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.60 55.0 4.42e-01 98.8% 55.0%
3816494 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 54.0 3.37e-01 100.0% 32.9%
3865783 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.59 53.0 3.11e-01 100.0% 18.2%
3916304 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.59 51.0 4.94e-01 95.0% 83.3%
3537637 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.59 52.0 3.54e-01 97.5% 43.2%
3309226 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.58 51.0 4.50e-01 95.0% 95.7%
3184851 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.58 54.0 5.29e-01 98.8% 94.1%
3422989 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.58 53.0 3.22e-01 100.0% 31.3%
3472858 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.58 48.0 5.07e-01 90.0% 97.3%
3224201 145.1.1.57 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › zf-TRAF_2 0.57 45.0 3.74e-01 88.7% 48.6%
3650817 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.57 49.0 3.16e-01 93.8% 36.9%
3403835 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.57 50.0 4.94e-01 95.0% 92.9%
3520890 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.57 46.0 3.11e-01 88.7% 26.2%
3457876 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.56 49.0 3.82e-01 100.0% 75.0%
3539114 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.56 46.0 3.34e-01 88.7% 33.8%
4160836 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.55 45.0 2.99e-01 88.7% 23.0%
3751898 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.55 45.0 4.80e-01 88.7% 100.0%
3915884 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.55 45.0 3.64e-01 88.7% 47.6%
3843694 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.55 43.0 3.22e-01 83.7% 36.9%
3655771 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.53 43.0 4.06e-01 90.0% 99.0%