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F-box_domain

Euk-Vir

Pandoravirus_salinus

F-box_domain__YP_008436654__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008436654 ↗
Protein ID:
F-box_domain
Kingdom:
euk

Quality

70.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-104
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 30.9 2.60e-07 58.8% 78.7%
PF00646.39 F-box 23.2 7.00e-05 52.9% 72.1%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.70 58.0 5.10e-01 89.7% 86.9%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 51.0 4.73e-01 82.4% 92.0%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.66 49.0 3.63e-01 79.4% 34.3%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.62 51.0 4.49e-01 89.7% 88.0%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 56.0 5.74e-01 100.0% 73.8%
3422328 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 54.0 4.96e-01 72.1% 55.3%
3691218 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 52.0 5.62e-01 70.6% 83.6%
3188576 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 53.0 4.91e-01 70.6% 57.6%
3734528 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 53.0 5.01e-01 72.1% 61.3%
3617289 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 53.0 5.66e-01 76.5% 83.3%
3664817 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 52.0 4.93e-01 72.1% 72.5%
3812206 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 52.0 5.05e-01 72.1% 69.3%
3727179 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 44.0 5.18e-01 76.5% 88.9%
3221696 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.73 59.0 3.57e-01 85.3% 34.0%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 51.0 4.70e-01 72.1% 62.4%
3731690 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 49.0 4.67e-01 70.6% 65.0%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 54.0 5.08e-01 77.9% 66.3%
3680688 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.72 60.0 3.61e-01 89.7% 22.4%
None — 0.72 60.0 3.46e-01 89.7% 28.9%
3259075 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 51.0 4.84e-01 80.9% 64.1%
3206932 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 57.0 3.53e-01 85.3% 43.9%
3762363 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 58.0 3.39e-01 89.7% 89.6%
3866275 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.70 55.0 3.37e-01 85.3% 27.0%
3250931 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 54.0 5.24e-01 83.8% 92.0%
3672250 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.68 57.0 4.05e-01 89.7% 93.7%
3466008 207.1.1.96 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 0.68 61.0 3.69e-01 100.0% 34.0%
4011424 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.68 61.0 5.52e-01 98.5% 100.0%
3301911 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 52.0 4.83e-01 82.4% 84.7%
3724474 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.68 57.0 3.36e-01 91.2% 94.4%
3711287 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.66 56.0 4.78e-01 89.7% 68.3%
3194725 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 57.0 5.31e-01 95.6% 95.3%
4022140 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.66 53.0 3.15e-01 86.8% 96.7%
3320386 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.66 60.0 5.42e-01 100.0% 100.0%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 59.0 5.18e-01 100.0% 96.0%
3328883 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 49.0 4.69e-01 80.9% 92.5%
3272640 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.64 55.0 3.63e-01 94.1% 97.5%
4019682 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.64 53.0 4.71e-01 89.7% 91.6%
3726637 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 57.0 3.58e-01 100.0% 35.9%
3837286 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.63 52.0 4.74e-01 89.7% 85.6%
3208443 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 56.0 4.86e-01 100.0% 84.8%
3726694 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.62 52.0 3.17e-01 91.2% 27.6%
3639601 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.62 54.0 3.19e-01 95.6% 98.9%
4545458 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.62 51.0 4.48e-01 89.7% 91.0%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.59 54.0 5.19e-01 100.0% 91.0%
3273645 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.59 54.0 5.11e-01 100.0% 91.3%
3236656 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.59 52.0 4.11e-01 100.0% 48.6%
3675534 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.58 54.0 5.07e-01 100.0% 85.0%
3363836 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.57 52.0 4.81e-01 100.0% 88.2%
3344543 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.56 51.0 4.72e-01 100.0% 87.1%
D2 medium residues 121-221
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_687__YP_008437699__Pandoravirus_salinus__1349410__D149-250
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5aarA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.74 41.0 3.31e-01 98.0% 30.3%
2bmbA02 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.54 47.0 3.38e-01 100.0% 33.2%
6qm7A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 45.0 3.45e-01 99.0% 86.9%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.51 35.0 3.54e-01 97.0% 71.4%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 34.0 3.21e-01 88.1% 55.4%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.50 34.0 3.45e-01 93.1% 69.3%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4487472 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.59 45.0 4.17e-01 81.2% 64.6%
5008560 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.57 39.0 3.91e-01 71.3% 71.4%
3172472 2002.1.1.36 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.54 46.0 3.34e-01 99.0% 44.4%
D3 medium residues 277-353_409-432
PDB