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F-box_domain

Euk-Vir

Pandoravirus_salinus

F-box_domain__YP_008437493__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008437493 ↗
Protein ID:
F-box_domain
Kingdom:
euk

Quality

78.7 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (63 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 24-74
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 28.1 2.00e-06 88.2% 83.0%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 59.0 6.66e-01 88.2% 97.4%
4i6jB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.81 57.0 6.06e-01 82.4% 90.5%
2e31A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.77 65.0 6.09e-01 92.2% 88.7%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.74 65.0 5.44e-01 100.0% 67.8%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.71 61.0 4.96e-01 100.0% 83.0%
2yvyA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.69 59.0 4.48e-01 100.0% 43.2%
8gpvA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.67 57.0 4.32e-01 100.0% 58.9%
3usyA01 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.64 53.0 4.46e-01 100.0% 55.2%
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.63 52.0 4.00e-01 100.0% 39.4%
1iupA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 53.0 3.38e-01 100.0% 72.3%
1lrvA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 45.0 3.03e-01 98.0% 18.0%
1wpbB02 1.10.3190.10 Mainly Alpha › Orthogonal Bundle › yfbu gene product, domain 2 › yfbu gene product, domain 2 0.60 49.0 3.90e-01 96.1% 64.3%
2qwoB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.59 46.0 3.88e-01 88.2% 93.5%
4e12A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 45.0 3.87e-01 92.2% 78.2%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.56 41.0 3.45e-01 82.4% 43.8%
6n8eA04 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 44.0 2.97e-01 100.0% 76.0%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 38.0 3.30e-01 72.5% 67.1%
2veoA02 1.10.260.130 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.53 38.0 3.27e-01 80.4% 52.1%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3818983 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 65.0 7.21e-01 78.4% 95.0%
3304043 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 63.0 7.00e-01 78.4% 95.0%
3806207 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 64.0 7.06e-01 84.3% 97.5%
3823345 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 62.0 6.25e-01 78.4% 76.0%
3618416 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 63.0 6.91e-01 84.3% 97.5%
3470594 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 65.0 6.38e-01 84.3% 74.5%
3314603 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.86 58.0 6.17e-01 74.5% 80.0%
3233721 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 68.0 5.56e-01 86.3% 75.6%
3450600 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 63.0 6.61e-01 82.4% 88.9%
3617100 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 62.0 5.74e-01 86.3% 61.5%
3991559 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 66.0 6.23e-01 84.3% 76.7%
3544561 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 70.0 5.90e-01 90.2% 96.2%
3440864 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 62.0 6.30e-01 82.4% 82.0%
3545077 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 70.0 6.60e-01 92.2% 86.7%
4245088 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 69.0 5.99e-01 90.2% 85.3%
3827758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.82 70.0 4.16e-01 92.2% 20.9%
3261484 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 62.0 5.72e-01 82.4% 67.7%
3339201 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 61.0 6.43e-01 84.3% 91.1%
3875490 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 69.0 5.62e-01 92.2% 100.0%
3437176 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 64.0 6.06e-01 86.3% 71.7%
3995930 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 62.0 5.71e-01 92.2% 64.6%
3817998 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 69.0 4.28e-01 92.2% 26.3%
3879309 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 68.0 6.07e-01 92.2% 88.6%
3854698 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.81 69.0 3.99e-01 92.2% 14.7%
3579997 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 68.0 6.07e-01 92.2% 100.0%
3492973 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.81 68.0 4.03e-01 92.2% 18.0%
4879175 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 67.0 6.17e-01 90.2% 95.3%
3902012 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 67.0 6.03e-01 92.2% 88.6%
None — 0.80 68.0 3.99e-01 92.2% 15.5%
3761388 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 69.0 5.76e-01 94.1% 89.4%
3930695 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 68.0 5.94e-01 94.1% 93.3%
3613804 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 65.0 6.36e-01 92.2% 83.6%
3423552 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 68.0 4.46e-01 94.1% 32.2%
3537637 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 68.0 4.20e-01 96.1% 21.8%
3420676 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.79 66.0 4.08e-01 92.2% 23.7%
3465759 207.1.1.99 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 0.78 66.0 4.15e-01 94.1% 27.6%
3185324 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 70.0 5.95e-01 100.0% 97.5%
3448066 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 68.0 5.47e-01 96.1% 68.4%
3404584 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 58.0 6.05e-01 90.2% 91.1%
3223791 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 61.0 5.78e-01 86.3% 73.3%
3825072 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.77 70.0 4.24e-01 100.0% 33.3%
4593317 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 60.0 5.71e-01 86.3% 73.3%
3865783 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.76 68.0 3.77e-01 100.0% 12.3%
4073598 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 58.0 5.42e-01 86.3% 67.7%
3425480 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 67.0 5.07e-01 100.0% 79.1%
3807195 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 68.0 6.04e-01 100.0% 84.3%
3448206 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 55.0 5.38e-01 88.2% 74.5%
3274776 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 65.0 5.28e-01 100.0% 76.8%
3641391 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.73 62.0 3.87e-01 94.1% 29.3%
3727492 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 52.0 5.46e-01 94.1% 88.9%
3751898 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.72 65.0 5.82e-01 100.0% 97.1%
3256545 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 54.0 5.02e-01 86.3% 64.6%
3276410 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 62.0 5.31e-01 100.0% 82.4%
None — 0.71 60.0 3.56e-01 94.1% 16.9%
3204329 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 62.0 4.94e-01 100.0% 84.8%
3643181 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 62.0 5.50e-01 100.0% 89.3%
3927915 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 63.0 5.52e-01 100.0% 73.3%
3230101 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.68 57.0 4.05e-01 100.0% 34.1%
3640174 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.67 59.0 5.21e-01 100.0% 68.0%
4021839 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 57.0 4.93e-01 100.0% 88.2%
3934848 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.67 54.0 5.00e-01 94.1% 92.9%
3386338 531.2.1.1 ↗ alpha arrays › Domains of FliG › Middle domain of FliG › Middle domain of FliG › FliG_M 0.65 54.0 4.64e-01 100.0% 57.8%
3873597 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.60 48.0 3.83e-01 94.1% 65.2%
1834406 101.1.3.2 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Terminase_2 0.56 40.0 3.97e-01 82.4% 96.4%
4929462 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.54 44.0 3.50e-01 98.0% 80.0%
4516320 3949.1.1.1 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT 0.51 37.0 3.31e-01 92.2% 53.3%
3905065 2004.1.1.51 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 0.51 41.0 2.89e-01 98.0% 83.6%
3225449 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.51 40.0 3.64e-01 92.2% 81.3%
D2 medium residues 75-174
PDB
Domain cluster: rep: Ankyrin_repeat_domain_containing_protein__YP_009480689__Pandoravirus_macleodensis__2107707__D456-515
D3 medium residues 175-275
PDB
Domain cluster: rep: Ankyrin_repeat_domain_containing_protein__YP_009482107__Pandoravirus_neocaledonia__2107708__D188-246_260-279