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F-box_domain

Euk-Vir

Pandoravirus_salinus

F-box_domain__YP_008437518__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008437518 ↗
Protein ID:
F-box_domain
Kingdom:
euk

Quality

74.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-87
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009482088__Pandoravirus_neocaledonia__2107708__D17-87
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 34.2 2.50e-08 69.0% 91.5%
D2 medium residues 88-201
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t0yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.74 52.0 5.79e-01 99.1% 92.2%
1v6eA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.72 49.0 5.77e-01 96.5% 100.0%
1wjuA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.72 49.0 5.23e-01 99.1% 79.0%
1wjnA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.71 52.0 5.61e-01 100.0% 89.7%
2kanA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.71 45.0 5.44e-01 98.2% 100.0%
4hpmD00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.69 47.0 5.34e-01 98.2% 96.3%
1oeyA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.69 48.0 5.53e-01 99.1% 100.0%
2dajA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 44.0 4.80e-01 100.0% 83.5%
1euvB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 42.0 4.90e-01 99.1% 92.4%
4tq1A02 3.10.20.620 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 45.0 5.02e-01 99.1% 87.9%
3w1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 45.0 4.74e-01 100.0% 77.9%
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 43.0 5.02e-01 96.5% 100.0%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 47.0 5.19e-01 100.0% 95.6%
2kkcA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 51.0 5.44e-01 99.1% 100.0%
3dadA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 52.0 3.76e-01 100.0% 31.8%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 44.0 4.85e-01 100.0% 96.5%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 44.0 4.74e-01 99.1% 88.4%
2aehA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 47.0 5.05e-01 100.0% 99.0%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 48.0 5.13e-01 100.0% 100.0%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 44.0 4.91e-01 96.5% 100.0%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 46.0 4.97e-01 99.1% 98.9%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 49.0 4.65e-01 100.0% 76.7%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3421895 221.1.1.111 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiq_DUF_assoc 0.76 53.0 5.39e-01 100.0% 73.6%
3406765 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.75 52.0 5.68e-01 95.6% 85.3%
3624737 221.1.1.52 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.75 53.0 6.09e-01 100.0% 100.0%
3404934 221.1.1.52 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.74 53.0 5.77e-01 100.0% 89.4%
3741010 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.74 54.0 5.95e-01 100.0% 95.6%
3527416 221.1.1.52 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.74 52.0 5.65e-01 99.1% 87.2%
3322600 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.74 53.0 6.06e-01 99.1% 100.0%
3237321 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.73 47.0 5.02e-01 100.0% 75.0%
4028810 221.1.1.52 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.72 52.0 5.89e-01 97.4% 100.0%
3347090 221.1.1.159 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF7138 0.71 51.0 5.76e-01 97.4% 100.0%
6131 221.1.1.52 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.71 50.0 5.48e-01 99.1% 87.4%
3462014 221.1.1.159 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF7138 0.71 52.0 5.58e-01 99.1% 90.5%
6141 221.1.1.52 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.71 52.0 5.61e-01 100.0% 89.7%
3269509 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 49.0 5.55e-01 99.1% 96.5%
4946399 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 49.0 5.57e-01 98.2% 96.5%
3222177 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 51.0 5.55e-01 100.0% 92.5%
3275839 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.69 49.0 5.26e-01 100.0% 86.3%
3266764 221.1.1.46 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg 0.69 51.0 5.54e-01 100.0% 92.6%
6184 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.69 48.0 5.53e-01 99.1% 100.0%
4027791 221.1.1.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DIX 0.68 49.0 5.60e-01 99.1% 100.0%
3543844 221.1.1.46 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg 0.68 52.0 5.48e-01 100.0% 91.0%
3938461 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 52.0 5.56e-01 100.0% 93.0%
3647312 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 50.0 5.36e-01 100.0% 91.6%
3702086 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.67 49.0 5.22e-01 95.6% 87.0%
3251388 221.1.1.52 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.67 51.0 5.29e-01 99.1% 85.7%
3916476 221.1.1.73 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.67 48.0 5.37e-01 100.0% 98.8%
3595875 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.67 53.0 5.74e-01 97.4% 100.0%
3925365 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 56.0 5.83e-01 100.0% 100.0%
3174077 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 54.0 5.23e-01 100.0% 78.4%
3257528 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 48.0 5.06e-01 97.4% 86.0%
3389065 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 53.0 5.37e-01 100.0% 88.2%
3594994 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 51.0 5.50e-01 100.0% 100.0%
4228029 221.1.1.154 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ELMO_N 0.65 49.0 5.24e-01 99.1% 90.0%
3726224 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 50.0 5.18e-01 100.0% 87.6%
4029648 221.1.1.30 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAP18 0.65 58.0 5.77e-01 100.0% 94.2%
3619871 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 57.0 5.71e-01 100.0% 94.8%
1295897 221.1.1.46 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg 0.64 55.0 5.04e-01 99.1% 70.9%
3533173 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.64 44.0 5.07e-01 98.2% 100.0%
3463286 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.64 53.0 5.64e-01 100.0% 100.0%
3497076 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 47.0 5.14e-01 96.5% 95.6%
3592700 221.1.1.52 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.64 54.0 5.49e-01 100.0% 90.3%
3405569 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.64 48.0 4.87e-01 97.4% 80.9%
3186847 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 57.0 5.61e-01 99.1% 91.1%
3939276 221.1.1.30 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAP18 0.64 58.0 5.63e-01 100.0% 92.8%
3275391 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 51.0 5.19e-01 98.2% 88.2%
3212420 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 53.0 5.16e-01 99.1% 83.2%
4208835 221.1.1.113 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.63 53.0 5.31e-01 100.0% 89.6%
3398210 221.1.1.55 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RAWUL 0.63 51.0 5.35e-01 100.0% 96.2%
3932396 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 53.0 5.57e-01 98.2% 99.0%
3694978 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 49.0 5.34e-01 100.0% 100.0%
3171825 221.1.1.95 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Dsc3_N 0.62 53.0 5.41e-01 99.1% 94.5%
3801678 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 53.0 5.18e-01 100.0% 84.8%
3663256 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.62 50.0 4.92e-01 99.1% 80.8%
3928806 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 53.0 5.47e-01 100.0% 100.0%
3798349 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 44.0 5.00e-01 97.4% 100.0%
3925364 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 51.0 5.37e-01 96.5% 96.2%
3845569 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.61 50.0 5.18e-01 100.0% 93.5%
3935404 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.61 46.0 5.11e-01 97.4% 100.0%
4524718 221.1.1.88 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CLU_N 0.61 47.0 5.10e-01 98.2% 98.9%
3507289 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.61 49.0 4.77e-01 100.0% 76.9%
4011129 221.1.1.46 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg 0.61 51.0 5.27e-01 100.0% 97.1%
3930804 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 51.0 5.21e-01 99.1% 94.5%
3876105 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 46.0 5.02e-01 99.1% 97.9%
3531085 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.60 46.0 5.03e-01 99.1% 97.9%
3930803 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 55.0 5.05e-01 100.0% 77.9%
3208439 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 50.0 5.07e-01 100.0% 92.7%
3898409 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.60 48.0 5.06e-01 100.0% 97.0%
3526700 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.60 47.0 4.53e-01 100.0% 71.9%
3934381 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 50.0 5.20e-01 99.1% 99.0%
3268521 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 54.0 4.86e-01 100.0% 87.1%
3569682 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.59 47.0 4.73e-01 100.0% 85.2%
4183759 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 53.0 3.47e-01 99.1% 23.3%
3211533 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 53.0 4.93e-01 100.0% 81.4%
3783288 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 51.0 5.24e-01 100.0% 100.0%
3551231 221.1.1.87 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.58 45.0 4.70e-01 96.5% 89.5%
3620456 221.1.1.64 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.58 50.0 5.14e-01 99.1% 100.0%
3407846 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.58 46.0 4.93e-01 100.0% 98.0%
3800190 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 46.0 4.87e-01 99.1% 100.0%
3992727 221.1.1.19 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DCX 0.57 42.0 4.47e-01 97.4% 89.0%
3574660 207.1.1.372 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › Ubiquitin_2 0.56 52.0 3.58e-01 100.0% 40.5%
3778063 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 50.0 4.86e-01 100.0% 90.0%
3582833 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.56 48.0 4.95e-01 100.0% 99.1%
3488019 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.56 50.0 4.63e-01 99.1% 78.5%
4599214 221.1.1.73 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.56 46.0 4.76e-01 97.4% 96.2%
3611560 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 50.0 4.84e-01 98.2% 93.6%
3695272 221.1.1.93 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.55 50.0 4.72e-01 100.0% 85.2%
3594681 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 47.0 4.84e-01 96.5% 97.3%
3193904 221.1.1.93 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.54 48.0 4.65e-01 100.0% 90.0%
4100100 221.1.1.68 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ATG5_UblA 0.54 48.0 4.61e-01 100.0% 85.2%
3940762 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 48.0 4.73e-01 99.1% 96.0%
4015965 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 46.0 4.62e-01 96.5% 91.7%
D3 medium residues 202-263
PDB