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F-box_domain

Euk-Vir

Pandoravirus_salinus

F-box_domain__YP_008437564__Pandoravirus_salinus__1349410

Identity

Accession:: YP_008437564 ↗
Protein ID:: F-box_domain
Kingdom:: euk

Quality

71.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 283-354

PDB

Domain cluster: rep: hypothetical_protein_pneo_cds_491__YP_009482101__Pandoravirus_neocaledonia__2107708__D285-355

D2 medium residues 1-84

PDB

Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_008318724__Pandoravirus_dulcis__1349409__D16-76

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12937.13 best	F-box-like	33.8	3.20e-08	54.8%	78.7%
PF00646.39	F-box	18.3	2.40e-03	32.1%	55.8%

D3 medium residues 85-110_149-282

PDB

Domain cluster: representative

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2fji101	1.10.357.50	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.61	47.0	4.31e-01	80.0%	82.8%
7qihA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.60	34.0	4.21e-01	83.7%	89.1%
5djsA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.58	35.0	3.70e-01	85.0%	65.7%
1h6gA01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.56	32.0	3.71e-01	77.5%	75.6%
2l6xA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.55	40.0	3.51e-01	73.8%	86.4%
4epzA00	1.25.40.810	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ	0.54	37.0	3.83e-01	98.8%	72.1%
6a2aA01	1.50.10.130	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Terpene synthase, N-terminal domain	0.54	34.0	3.23e-01	79.4%	50.5%
1kt1A03	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	39.0	4.00e-01	91.3%	76.6%
8sbeA02	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.54	40.0	3.84e-01	92.5%	66.3%
1juqC00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.53	41.0	4.26e-01	98.8%	88.6%
2iu5B00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	37.0	3.66e-01	72.5%	87.6%
6gyhA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	39.0	3.50e-01	78.8%	72.4%
4gycA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	39.0	3.51e-01	78.8%	71.8%
2xqyA01	3.30.500.50	Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 ›	0.51	39.0	3.76e-01	78.1%	87.1%
2yvkA01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.51	36.0	3.81e-01	78.8%	79.1%
2qk2A01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.50	41.0	3.66e-01	88.7%	76.1%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3252121	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.60	50.0	4.70e-01	90.6%	73.2%
5029616	109.3.1.487 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF5667	0.59	49.0	3.88e-01	90.6%	75.9%
3385722	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.57	39.0	3.66e-01	93.8%	57.4%
3400457	109.4.1.839 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT	0.55	41.0	4.14e-01	98.8%	78.7%
3253027	109.8.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Arp2/3 complex 16 KDa subunit ARPC5 › Arp2/3 complex 16 KDa subunit ARPC5 › P16-Arc	0.53	37.0	3.91e-01	91.3%	82.6%
3397305	5001.1.1.5 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3	0.52	40.0	3.28e-01	79.4%	71.7%
3731618	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.51	36.0	3.42e-01	93.8%	59.5%
3964217	1075.5.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter	0.51	43.0	3.65e-01	88.1%	85.5%
5065615	3883.1.1.1 ↗	alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf	0.51	44.0	4.18e-01	95.0%	92.8%
3961515	109.4.1.45 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BTAD	0.51	41.0	3.72e-01	86.3%	76.8%