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F-box_domain

Euk-Vir

Pandoravirus_salinus

F-box_domain__YP_008437605__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008437605 ↗
Protein ID:
F-box_domain
Kingdom:
euk

Quality

70.5 mean pLDDT

Taxonomy

TaxID: 1349410

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 333-491
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.59 36.0 4.19e-01 74.2% 85.0%
4o6mA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.57 40.0 3.75e-01 70.4% 65.6%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 49.0 4.60e-01 100.0% 77.8%
2c2lA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 40.0 4.34e-01 100.0% 91.0%
4g3aB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 48.0 4.26e-01 100.0% 74.4%
2gnoA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.51 24.0 2.94e-01 71.1% 66.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3798221 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.67 52.0 5.02e-01 100.0% 73.1%
3476945 109.3.1.8 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.67 52.0 5.41e-01 100.0% 89.0%
4279904 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.63 46.0 3.80e-01 98.7% 43.3%
3288064 601.1.1.55 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF7134 0.61 42.0 4.31e-01 95.0% 72.3%
3757627 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.61 57.0 4.43e-01 100.0% 63.1%
3584867 109.4.1.83 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf 0.59 43.0 4.24e-01 100.0% 70.8%
3821288 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.59 43.0 4.38e-01 100.0% 75.0%
3421464 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 48.0 4.39e-01 100.0% 65.6%
3318512 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 45.0 4.74e-01 100.0% 91.4%
3424602 109.4.1.1271 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.58 43.0 4.56e-01 97.5% 89.3%
3848445 109.3.1.163 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 0.57 53.0 4.24e-01 100.0% 52.7%
3566944 109.3.1.166 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.56 51.0 4.40e-01 100.0% 63.2%
3336719 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.53 43.0 4.31e-01 100.0% 85.0%
3451478 109.4.1.1374 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, TPR_24 0.52 47.0 3.64e-01 100.0% 46.5%
3703545 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 47.0 4.51e-01 100.0% 96.7%
3828651 109.4.1.621 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 0.52 38.0 4.13e-01 96.2% 96.0%
3643365 109.4.1.1273 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.50 45.0 4.24e-01 98.1% 87.4%
3574747 109.4.1.1148 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_NUP160_120_M 0.50 39.0 4.19e-01 95.0% 99.3%
D2 medium residues 202-308
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5h28A01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.63 56.0 5.09e-01 98.1% 99.3%
5eidA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.61 50.0 4.81e-01 93.5% 78.0%
2dznA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.60 49.0 3.86e-01 91.6% 42.0%
3eu9C00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.59 52.0 4.08e-01 97.2% 59.3%
1ympA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.59 48.0 4.55e-01 90.7% 73.3%
3b7bB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.59 50.0 3.96e-01 94.4% 57.1%
7xceA01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.58 50.0 3.84e-01 94.4% 52.5%
1ihbA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.58 48.0 4.27e-01 90.7% 62.2%
1k1aA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.58 51.0 4.02e-01 98.1% 70.2%
3gzsA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 48.0 3.22e-01 95.3% 98.8%
5uqeC03 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.58 40.0 4.54e-01 75.7% 98.7%
5z2mB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.56 50.0 4.62e-01 100.0% 98.5%
5cecB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.55 48.0 4.04e-01 98.1% 65.8%
3spcA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 37.0 3.50e-01 89.7% 57.5%
3on2A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 42.0 3.50e-01 82.2% 81.1%
5z96A01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.54 46.0 3.63e-01 96.3% 49.8%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4000553 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.70 59.0 4.39e-01 91.6% 37.6%
3254820 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.66 54.0 5.05e-01 100.0% 71.1%
4289299 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.64 54.0 4.17e-01 90.7% 57.0%
4026730 109.3.1.164 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.64 52.0 5.14e-01 90.7% 81.7%
3911998 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.64 53.0 5.42e-01 93.5% 92.4%
3801401 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.63 56.0 4.09e-01 100.0% 44.5%
3900408 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.63 53.0 5.02e-01 93.5% 77.6%
3474496 109.3.1.33 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_3 0.63 49.0 5.32e-01 86.9% 100.0%
3572778 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.63 53.0 4.09e-01 91.6% 41.2%
1735013 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.63 52.0 3.72e-01 91.6% 30.2%
3775252 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.63 53.0 3.69e-01 91.6% 29.1%
3252035 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.63 55.0 4.83e-01 97.2% 71.9%
3918534 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.63 50.0 5.03e-01 90.7% 84.5%
3897537 109.3.1.340 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_3, Ank_4, Ank_5 0.62 55.0 4.74e-01 100.0% 61.8%
3760277 109.3.1.166 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.62 49.0 4.41e-01 89.7% 59.4%
3884335 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.62 51.0 5.15e-01 91.6% 87.3%
3503449 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.62 53.0 4.33e-01 92.5% 50.8%
3311592 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.62 55.0 4.34e-01 100.0% 67.0%
4019165 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.62 55.0 4.89e-01 100.0% 92.3%
3536600 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.61 55.0 4.83e-01 100.0% 85.0%
3993027 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.61 52.0 4.99e-01 96.3% 80.5%
3414345 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.61 55.0 4.03e-01 99.1% 48.4%
3879610 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.61 50.0 4.84e-01 92.5% 79.2%
3241525 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.61 54.0 4.33e-01 100.0% 95.9%
3998445 109.3.1.166 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.61 54.0 3.85e-01 99.1% 33.1%
3307832 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.61 52.0 4.23e-01 94.4% 51.7%
3594521 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.61 50.0 5.11e-01 92.5% 96.0%
4015443 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.61 52.0 4.11e-01 95.3% 58.7%
3453000 109.3.1.166 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.61 51.0 4.39e-01 93.5% 78.3%
3535916 109.3.1.163 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 0.61 52.0 4.33e-01 94.4% 68.4%
3726330 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.61 50.0 4.08e-01 90.7% 48.0%
3925987 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.61 52.0 5.16e-01 96.3% 90.9%
3448837 109.3.1.164 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.61 52.0 4.29e-01 94.4% 69.7%
3569545 109.3.1.8 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.61 51.0 3.75e-01 94.4% 34.1%
3622165 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.61 53.0 5.18e-01 100.0% 88.3%
None 0.61 50.0 4.75e-01 90.7% 78.9%
3426441 109.3.1.166 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.61 50.0 3.57e-01 90.7% 29.7%
3829173 109.3.1.166 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.60 52.0 4.11e-01 94.4% 63.6%
4072765 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.60 51.0 3.92e-01 94.4% 52.2%
3453001 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.60 51.0 4.31e-01 94.4% 75.1%
3479978 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.60 50.0 4.20e-01 94.4% 52.1%
4013143 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.60 51.0 3.58e-01 94.4% 34.9%
3771742 109.3.1.170 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_4 0.60 53.0 4.50e-01 98.1% 66.3%
3544350 109.3.1.166 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.60 53.0 4.77e-01 100.0% 90.7%
3235934 109.3.1.166 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.60 52.0 4.42e-01 98.1% 76.1%
3356438 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.60 51.0 4.94e-01 94.4% 84.2%
3580009 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.59 50.0 4.28e-01 91.6% 59.4%
3624086 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.59 51.0 4.35e-01 98.1% 73.0%
3449169 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.59 52.0 3.98e-01 98.1% 70.8%
3547164 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.59 52.0 4.33e-01 100.0% 72.8%
3517278 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.59 48.0 4.11e-01 90.7% 54.9%
3464349 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.58 51.0 4.43e-01 96.3% 67.3%
1720122 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.58 50.0 4.11e-01 94.4% 63.3%
3576605 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.58 51.0 4.41e-01 98.1% 74.1%
4011917 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.58 50.0 3.95e-01 94.4% 60.1%
3814108 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.58 49.0 4.48e-01 93.5% 89.0%
3723266 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.58 50.0 4.00e-01 94.4% 66.7%
3803971 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.58 50.0 4.28e-01 94.4% 75.9%
3756678 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.58 51.0 4.18e-01 100.0% 81.5%
3710001 109.3.1.1 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank 0.58 50.0 3.64e-01 97.2% 40.0%
3728836 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.58 49.0 4.69e-01 96.3% 80.8%
3710550 109.3.1.164 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.57 48.0 3.80e-01 94.4% 52.9%
3932843 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.56 49.0 3.62e-01 100.0% 36.9%
3779405 109.4.1.546 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ecm29 0.53 46.0 3.28e-01 100.0% 51.3%
3539547 109.4.1.1939 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ECM29_N, HEAT_ECM29 0.51 45.0 2.72e-01 100.0% 21.5%
3953403 7011.1.1.1 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › FTSW_RODA_SPOVE 0.50 44.0 3.06e-01 100.0% 68.6%