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F-box_domain

Euk-Vir

Pandoravirus_salinus

F-box_domain__YP_008437904__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008437904 ↗
Protein ID:
F-box_domain
Kingdom:
euk

Quality

71.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 362-439_459-528
PDB
D2 medium residues 13-70_72-80_85-103
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009481283__Pandoravirus_macleodensis__2107707__D54-123
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 37.6 2.00e-09 51.2% 89.4%
PF00646.39 F-box 24.5 2.60e-05 46.5% 90.7%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.77 49.0 4.67e-01 70.9% 56.0%
2e31A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.73 44.0 5.13e-01 70.9% 85.5%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.71 51.0 5.14e-01 74.4% 75.0%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.68 46.0 4.45e-01 70.9% 68.7%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.54 38.0 3.60e-01 74.4% 84.3%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 36.0 2.38e-01 70.9% 22.7%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3194125 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 52.0 5.47e-01 70.9% 63.7%
3261282 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 54.0 6.83e-01 70.9% 96.4%
3770072 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 55.0 5.48e-01 70.9% 61.1%
3472074 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 53.0 5.15e-01 70.9% 55.8%
3909942 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 51.0 4.67e-01 70.9% 47.3%
3726840 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 53.0 5.71e-01 70.9% 72.0%
3643181 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 52.0 5.56e-01 70.9% 70.7%
3903969 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 54.0 5.34e-01 75.6% 62.2%
3861026 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 52.0 4.99e-01 70.9% 55.1%
3879992 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 53.0 5.51e-01 75.6% 68.8%
3726578 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 54.0 5.48e-01 75.6% 67.1%
3446581 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 58.0 5.90e-01 77.9% 72.9%
3806475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 51.0 5.42e-01 70.9% 70.7%
3312720 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 52.0 5.58e-01 75.6% 73.3%
3299128 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 52.0 4.93e-01 75.6% 55.0%
3685160 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 51.0 5.19e-01 70.9% 63.5%
3204462 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 59.0 5.10e-01 75.6% 70.4%
3730967 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 56.0 5.20e-01 75.6% 59.0%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 51.0 5.36e-01 70.9% 71.8%
4023099 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 54.0 4.84e-01 77.9% 52.2%
3256545 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 52.0 5.85e-01 74.4% 87.7%
3536855 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 58.0 5.58e-01 75.6% 72.6%
3209791 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 51.0 5.86e-01 75.6% 87.7%
3901480 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 51.0 5.34e-01 75.6% 71.2%
4545458 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 50.0 4.73e-01 70.9% 56.0%
3810074 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 50.0 5.24e-01 70.9% 70.9%
4012559 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 48.0 4.91e-01 70.9% 63.5%
3902311 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 56.0 5.69e-01 75.6% 75.3%
3698023 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 53.0 4.71e-01 77.9% 52.2%
3685535 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 53.0 5.50e-01 70.9% 75.0%
3821430 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 50.0 5.18e-01 74.4% 70.0%
3652521 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 50.0 5.47e-01 70.9% 78.1%
3691218 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 48.0 5.83e-01 75.6% 98.2%
3348915 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 57.0 5.14e-01 75.6% 68.2%
3631167 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 52.0 5.29e-01 72.1% 70.6%
4022899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 54.0 5.11e-01 75.6% 63.0%
3696138 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 54.0 5.27e-01 74.4% 69.5%
3490408 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 54.0 4.78e-01 76.7% 53.3%
3273645 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 52.0 5.42e-01 70.9% 78.8%
3187719 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 46.0 4.94e-01 70.9% 72.0%
3301911 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 48.0 4.85e-01 77.9% 65.9%
4019682 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 51.0 4.93e-01 70.9% 70.5%
3742900 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 55.0 4.67e-01 77.9% 61.5%
3184741 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 54.0 4.89e-01 75.6% 78.2%
3473623 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 47.0 4.76e-01 70.9% 65.9%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 54.0 5.06e-01 75.6% 72.0%
3854965 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 52.0 5.16e-01 74.4% 72.2%
3664299 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 51.0 4.95e-01 74.4% 70.5%
3422328 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 47.0 4.82e-01 77.9% 69.4%
3527636 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 48.0 4.76e-01 70.9% 69.7%
3575456 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 51.0 5.03e-01 75.6% 75.6%
3917759 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 48.0 4.54e-01 75.6% 69.0%
3837286 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.63 42.0 4.19e-01 75.6% 65.6%
3631996 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.62 44.0 4.38e-01 74.4% 72.2%
D3 medium residues 118-220
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 45.0 4.13e-01 100.0% 94.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4403166 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 25.0 3.11e-01 73.8% 66.2%
1170462 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.52 30.0 3.69e-01 92.2% 96.7%