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F-box_domain

Euk-Vir

Pandoravirus_salinus

F-box_domain__YP_008438127__Pandoravirus_salinus__1349410

Identity

Accession:: YP_008438127 ↗
Protein ID:: F-box_domain
Kingdom:: euk

Quality

62.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 14-69

PDB

Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_008318724__Pandoravirus_dulcis__1349409__D16-76

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12937.13 best	F-box-like	24.6	2.40e-05	91.1%	76.6%
PF00646.39	F-box	20.5	4.70e-04	55.4%	58.1%

D2 medium residues 70-238

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1qsaA02	1.10.1240.20	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain	0.55	26.0	3.56e-01	83.4%	98.6%
3opbA01	1.25.10.100	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant ›	0.54	45.0	3.77e-01	98.2%	51.9%
2yvyA01	1.25.60.10	Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like	0.53	34.0	3.90e-01	79.9%	87.2%
3pwfA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.52	36.0	4.04e-01	71.0%	96.2%
4me2A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	40.0	3.83e-01	82.2%	85.1%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3442391	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.63	47.0	5.22e-01	76.9%	100.0%
3686592	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.61	46.0	5.05e-01	94.1%	97.0%
3252121	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.57	48.0	4.68e-01	96.4%	81.1%
3713243	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	44.0	4.12e-01	95.3%	67.1%
3207930	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.55	44.0	3.54e-01	85.2%	48.7%
3640012	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.55	44.0	2.80e-01	85.2%	18.7%
4017062	109.3.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank	0.54	44.0	3.72e-01	87.0%	60.4%
3367669	109.4.1.1556 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_HEAT, PDS5	0.52	44.0	4.36e-01	98.8%	86.3%
3272621	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	43.0	3.61e-01	88.8%	54.2%
3797196	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	46.0	4.17e-01	97.0%	96.2%
4496821	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	43.0	3.51e-01	92.9%	76.5%
3475722	109.4.1.106 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CPL	0.51	46.0	3.12e-01	97.6%	37.7%

D3 medium residues 239-377

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3beyD00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.60	33.0	3.92e-01	92.8%	77.7%
1x5bA01	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.60	41.0	4.20e-01	84.9%	71.1%
3zc0D00	1.20.58.2140	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	43.0	3.91e-01	84.2%	60.4%
5u56A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.55	39.0	4.31e-01	92.1%	91.1%
2qeuB00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.54	35.0	3.65e-01	92.8%	68.4%
2r5sA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	33.0	3.97e-01	84.9%	95.5%
3woyA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.52	44.0	3.71e-01	92.8%	65.9%
7y4rB01	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.52	32.0	3.60e-01	90.6%	80.2%
3r9bA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.51	44.0	3.24e-01	95.7%	93.9%
3bujA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.50	43.0	3.18e-01	95.0%	90.9%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3435020	109.4.1.1886 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › At5g52880_ARM	0.59	40.0	4.54e-01	83.5%	94.0%
3800948	109.6.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF	0.58	53.0	4.25e-01	100.0%	85.6%
3200818	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	40.0	4.13e-01	88.5%	80.0%
3498511	109.6.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF	0.55	49.0	3.39e-01	100.0%	40.0%
5002888	608.1.1.1 ↗	alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD	0.54	33.0	3.38e-01	92.1%	62.2%
3712283	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	46.0	4.06e-01	98.6%	94.9%
3841533	109.3.1.96 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4	0.53	41.0	3.74e-01	100.0%	59.0%
3496655	109.4.1.410 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COBRA1	0.52	42.0	3.09e-01	86.3%	43.4%
2997703	149.1.1.0 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450	0.51	43.0	3.16e-01	93.5%	89.2%

D4 medium residues 378-484

PDB

Domain cluster: rep: F-box_domain_containing_protein__YP_009483581__Pandoravirus_quercus__2107709__D363-462

D5 medium residues 485-539

PDB