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F-box_domain

Euk-Vir

Pandoravirus_salinus

F-box_domain__YP_008438153__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008438153 ↗
Protein ID:
F-box_domain
Kingdom:
euk

Quality

77.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 134-227
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iqcA00 1.25.40.490 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 59.0 4.87e-01 97.9% 86.7%
1wy6A00 1.25.40.350 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 60.0 5.06e-01 100.0% 76.1%
3lxzB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 40.0 3.60e-01 74.5% 90.6%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.54 45.0 3.95e-01 96.8% 76.6%
4o6mA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.54 38.0 3.12e-01 75.5% 63.6%
2paqA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.53 37.0 3.06e-01 73.4% 63.3%
2lvfA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.52 36.0 3.47e-01 72.3% 93.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3296087 109.3.1.205 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28612 0.81 70.0 5.24e-01 93.6% 46.8%
4017980 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.79 73.0 5.87e-01 100.0% 60.6%
3616524 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.79 73.0 5.64e-01 100.0% 69.2%
3256485 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.78 70.0 5.61e-01 100.0% 71.4%
3195802 109.3.1.186 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_5 0.78 71.0 5.11e-01 100.0% 45.4%
3251248 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.78 69.0 4.46e-01 94.7% 30.0%
3725739 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.77 70.0 5.25e-01 100.0% 57.8%
4325700 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.75 67.0 5.57e-01 97.9% 74.4%
4681324 109.4.1.923 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › AEP1 0.73 65.0 4.48e-01 100.0% 43.3%
4584852 109.4.1.923 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › AEP1 0.68 57.0 4.70e-01 94.7% 70.0%
4445147 109.4.1.923 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › AEP1 0.68 60.0 4.01e-01 100.0% 36.8%
4577442 109.4.1.923 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › AEP1 0.67 59.0 4.46e-01 100.0% 92.9%
3924495 109.4.1.587 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mon2_C 0.66 59.0 4.08e-01 100.0% 75.4%
3665948 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.63 56.0 4.86e-01 98.9% 93.8%
3316394 109.4.1.1292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3 0.63 55.0 4.55e-01 97.9% 65.9%
3645625 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.63 55.0 4.21e-01 100.0% 69.1%
3330836 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.62 55.0 4.66e-01 100.0% 79.4%
3679654 109.4.1.1280 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long 0.62 53.0 4.85e-01 97.9% 89.2%
3306534 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.61 52.0 4.76e-01 96.8% 87.7%
3424708 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.61 52.0 4.60e-01 95.7% 72.9%
3824590 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.61 53.0 4.47e-01 100.0% 70.9%
3377126 109.4.1.1293 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 0.60 52.0 4.45e-01 96.8% 68.2%
3352830 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.60 52.0 4.66e-01 97.9% 85.2%
3650244 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 52.0 4.01e-01 100.0% 55.1%
3328279 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.60 48.0 4.80e-01 90.4% 88.0%
3671661 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.59 49.0 4.91e-01 93.6% 91.6%
3824817 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.59 47.0 4.70e-01 89.4% 88.0%
3426927 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.56 47.0 4.56e-01 94.7% 98.1%
D2 medium residues 228-243_261-365
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rg8A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 54.0 5.06e-01 91.7% 93.3%
2xheA04 1.25.40.60 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 41.0 4.14e-01 90.9% 80.5%
4hyqA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 42.0 3.44e-01 82.6% 72.5%
6e0bA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 45.0 3.27e-01 100.0% 62.7%
3dpjF00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 36.0 3.18e-01 75.2% 82.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3252179 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.74 64.0 6.24e-01 92.6% 91.5%
3998100 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 51.0 5.30e-01 77.7% 100.0%
3250526 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.68 62.0 5.09e-01 100.0% 57.7%
3346740 109.4.1.1374 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, TPR_24 0.67 61.0 5.13e-01 100.0% 64.9%
3553581 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 55.0 4.37e-01 93.4% 72.3%
3765686 109.38.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Telomere length regulation protein TEL2 › Telomere length regulation protein TEL2 › Telomere_reg-2, TELO2_ARM 0.63 55.0 3.83e-01 100.0% 47.7%
3216024 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 47.0 3.67e-01 86.0% 50.2%
3607202 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 50.0 4.21e-01 95.0% 76.2%
5076653 2007.3.1.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.58 46.0 4.12e-01 87.6% 64.4%
5058647 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 4.02e-01 85.1% 96.7%
4941988 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.51 35.0 3.37e-01 71.9% 89.7%
D3 medium residues 366-418
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.53e-01 83.0% 91.1%
5lo9A01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.56 42.0 3.71e-01 86.8% 80.2%
2okcB01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.55 42.0 3.33e-01 86.8% 75.8%
2gicD02 1.10.3610.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein 0.52 40.0 2.85e-01 90.6% 57.9%
4hn9A02 1.20.58.2180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 38.0 3.60e-01 100.0% 64.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3444128 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.60 50.0 4.17e-01 100.0% 58.1%
3687240 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 48.0 2.84e-01 100.0% 14.8%
3366917 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.53 41.0 4.07e-01 86.8% 92.7%
3906492 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.52 37.0 3.18e-01 79.2% 91.6%
3966057 4239.2.1.1 ↗ alpha arrays › DNA polymerase III theta subunit-like › LasR-specific antiactivator (QslA) › LasR-specific antiactivator (QslA) › QslA 0.51 37.0 3.27e-01 86.8% 54.7%
5017062 7094.1.1.4 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › PF27273 0.50 34.0 3.16e-01 73.6% 56.0%
D4 medium residues 419-499
PDB
Domain cluster: rep: F-box_domain_protein__YP_009119351__Pandoravirus_inopinatum__1605721__D428-494