F-box_domain

Euk-Vir

Pandoravirus_salinus

F-box_domain__YP_008438172__Pandoravirus_salinus__1349410

Identity

70.1 mean pLDDT

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

View cluster (32 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 29-85

PDB

Domain cluster: rep: F-box_domain_containing_protein__YP_009482610__Pandoravirus_neocaledonia__2107708__D12-61

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12937.13 best	F-box-like	34.7	1.70e-08	73.7%	87.2%

D2 medium residues 86-125_246-293

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3dxoB00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.60	38.0	3.48e-01	89.8%	47.9%
3bcyA00	3.40.1000.40	Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1	0.57	42.0	3.56e-01	77.3%	91.1%
2fpnA01	3.30.2030.10	Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like	0.53	40.0	3.43e-01	79.5%	74.3%
6eufA01	2.115.10.20	Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43	0.52	38.0	2.72e-01	80.7%	93.2%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3475268	77.1.1.5 ↗	beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN	0.61	49.0	4.38e-01	95.5%	63.5%
4954483	881.1.1.0 ↗	a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like	0.58	43.0	3.83e-01	78.4%	75.2%
4030599	77.2.1.1 ↗	beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN	0.58	51.0	4.25e-01	93.2%	61.5%
5035217	7579.1.1.6 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1	0.56	40.0	2.71e-01	73.9%	24.1%
3253682	77.2.1.1 ↗	beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN	0.55	45.0	3.67e-01	100.0%	50.0%
5077223	206.1.3.23 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase	0.55	41.0	2.66e-01	89.8%	17.9%
6336	331.13.1.1 ↗	a+b two layers › TBP-like › YwmB-like › YwmB-like › DUF1779	0.53	40.0	3.05e-01	79.5%	50.7%
4861054	873.1.1.3 ↗	a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Cellsynth_D	0.53	38.0	3.22e-01	75.0%	79.3%
3968112	881.1.1.0 ↗	a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like	0.52	41.0	3.40e-01	84.1%	67.5%

D3 medium residues 126-245

PDB

D4 medium residues 294-387

PDB

Domain cluster: rep: F-box_domain_containing_protein__YP_009482379__Pandoravirus_neocaledonia__2107708__D289-374

D5 medium residues 388-452

PDB

Domain cluster: rep: F-box_domain_containing_protein__YP_008318666__Pandoravirus_dulcis__1349409__D510-568

D6 medium residues 528-580

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4e4tA03	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.67	47.0	3.16e-01	73.6%	60.9%
3cqcA00	1.20.190.50	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 ›	0.63	48.0	3.20e-01	88.7%	32.0%
6uh2A01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.59	48.0	3.23e-01	96.2%	68.8%
6eqoA02	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.56	47.0	3.28e-01	100.0%	74.9%
4zbwA02	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.53	40.0	3.48e-01	84.9%	85.1%
3ltjA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.52	40.0	2.94e-01	98.1%	41.4%
3graA00	3.40.50.880	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain	0.51	41.0	2.97e-01	98.1%	83.8%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3937183	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.69	57.0	4.15e-01	90.6%	93.8%
3413101	109.4.1.158 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERAP1_C	0.64	52.0	3.28e-01	98.1%	28.7%
3303047	7579.1.1.16 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Palm_thioest	0.59	46.0	3.26e-01	88.7%	59.5%
3790104	109.3.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2	0.56	47.0	2.99e-01	98.1%	20.0%
3570381	372.2.1.1 ↗	a+b complex topology › RNase A-like › EndoU-like › EndoU-like › XendoU	0.55	48.0	3.09e-01	100.0%	45.8%