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F-box_domain
Euk-VirPandoravirus_salinus
F-box_domain__YP_008438762__Pandoravirus_salinus__1349410
Identity
- Accession:
- YP_008438762 ↗
- Protein ID:
- F-box_domain
- Kingdom:
- euk
Quality
65.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 184-253
D2
medium
residues 20-69
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12937.13 best | F-box-like | 40.2 | 3.20e-10 | 100.0% | 93.6% |
| PF00646.39 | F-box | 24.7 | 2.30e-05 | 92.0% | 88.4% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ibkB00 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.88 | 70.0 | 7.28e-01 | 96.0% | 93.5% |
| 2p1oB01 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.88 | 63.0 | 6.97e-01 | 80.0% | 100.0% |
| 3ogkB01 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.84 | 58.0 | 6.26e-01 | 84.0% | 87.8% |
| 1fs2A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.83 | 67.0 | 4.16e-01 | 96.0% | 17.0% |
| 2ovrB01 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.78 | 67.0 | 5.58e-01 | 100.0% | 55.2% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 41.0 | 4.16e-01 | 72.0% | 77.6% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 39.0 | 3.72e-01 | 72.0% | 65.5% |
| 4wr4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 42.0 | 3.44e-01 | 88.0% | 49.5% |
| 2ixnA02 | 1.20.120.1150 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphotyrosyl phosphate activator, C-terminal lid domain | 0.56 | 43.0 | 3.52e-01 | 94.0% | 43.0% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 44.0 | 3.20e-01 | 98.0% | 90.0% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 34.0 | 3.35e-01 | 72.0% | 96.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3635440 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.96 | 77.0 | 7.73e-01 | 90.0% | 84.0% |
| 3341479 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.90 | 74.0 | 6.53e-01 | 98.0% | 62.9% |
| 1807269 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.89 | 71.0 | 7.28e-01 | 90.0% | 89.6% |
| 3793366 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.89 | 66.0 | 7.22e-01 | 84.0% | 97.5% |
| 3688846 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.86 | 65.0 | 7.11e-01 | 84.0% | 100.0% |
| 3688419 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.85 | 63.0 | 6.90e-01 | 90.0% | 100.0% |
| 3217628 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.85 | 63.0 | 6.84e-01 | 86.0% | 100.0% |
| 3315483 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.84 | 66.0 | 6.25e-01 | 90.0% | 71.7% |
| 3209617 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.83 | 70.0 | 4.09e-01 | 92.0% | 19.5% |
| 3721004 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.83 | 66.0 | 5.37e-01 | 86.0% | 47.8% |
| 3729229 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.83 | 66.0 | 4.02e-01 | 86.0% | 29.5% |
| 3501462 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.83 | 59.0 | 6.48e-01 | 84.0% | 95.0% |
| 3653326 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.83 | 68.0 | 7.17e-01 | 96.0% | 100.0% |
| 3417160 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.82 | 67.0 | 5.32e-01 | 98.0% | 46.3% |
| 3688868 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.82 | 66.0 | 5.57e-01 | 90.0% | 64.7% |
| 3822418 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.82 | 73.0 | 4.57e-01 | 98.0% | 37.6% |
| 3422328 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.81 | 70.0 | 5.79e-01 | 98.0% | 55.3% |
| 3301911 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.81 | 69.0 | 5.73e-01 | 98.0% | 55.3% |
| 3189379 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.80 | 73.0 | 6.68e-01 | 100.0% | 90.8% |
| 3467883 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.79 | 57.0 | 5.42e-01 | 80.0% | 65.0% |
| 3693589 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.78 | 61.0 | 6.36e-01 | 90.0% | 97.8% |
| 3191430 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.77 | 67.0 | 5.67e-01 | 98.0% | 90.4% |
| 3233981 | 145.1.1.7 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › PHA-1 | 0.77 | 63.0 | 3.72e-01 | 90.0% | 15.2% |
| 3738910 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.77 | 67.0 | 5.58e-01 | 100.0% | 57.6% |
| 3939710 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.75 | 67.0 | 6.18e-01 | 100.0% | 80.0% |
| 3328883 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.75 | 65.0 | 5.56e-01 | 100.0% | 61.3% |
| 3466008 | 207.1.1.96 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 | 0.74 | 62.0 | 3.64e-01 | 98.0% | 22.8% |
| 3259075 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.73 | 64.0 | 5.50e-01 | 98.0% | 75.6% |
| 3339620 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.70 | 55.0 | 5.72e-01 | 98.0% | 100.0% |
| 3621592 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.69 | 54.0 | 5.40e-01 | 90.0% | 94.0% |
| 3685135 | 207.1.1.85 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like | 0.69 | 58.0 | 3.81e-01 | 100.0% | 30.6% |
| 2389764 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.67 | 52.0 | 5.39e-01 | 96.0% | 100.0% |
| 3203146 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.67 | 56.0 | 4.41e-01 | 100.0% | 44.3% |
| 3920011 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.66 | 52.0 | 3.33e-01 | 92.0% | 26.2% |
| 3792952 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.57 | 40.0 | 3.55e-01 | 76.0% | 74.7% |
| 3692267 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 38.0 | 2.68e-01 | 98.0% | 24.7% |
D3
medium
residues 95-183
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kj8A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.67 | 48.0 | 4.40e-01 | 86.5% | 56.8% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.65 | 53.0 | 5.17e-01 | 94.4% | 79.8% |
| 4od4A02 | 1.20.120.1780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase | 0.61 | 45.0 | 4.08e-01 | 77.5% | 81.5% |
| 2hxoA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 43.0 | 3.70e-01 | 75.3% | 56.9% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.59 | 43.0 | 3.98e-01 | 77.5% | 68.1% |
| 1dgfA03 | 1.20.1370.60 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › | 0.59 | 50.0 | 4.66e-01 | 95.5% | 98.2% |
| 3u8vA00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.59 | 39.0 | 4.05e-01 | 88.8% | 73.5% |
| 3lsjA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 48.0 | 4.06e-01 | 91.0% | 70.6% |
| 2fupA00 | 1.20.58.300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like | 0.58 | 48.0 | 4.29e-01 | 92.1% | 100.0% |
| 1gqiA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 46.0 | 3.19e-01 | 91.0% | 33.1% |
| 8gr2A01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 48.0 | 3.76e-01 | 95.5% | 53.3% |
| 5cl3A00 | 1.25.10.90 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › | 0.56 | 47.0 | 3.55e-01 | 95.5% | 39.8% |
| 2b6cA02 | 1.25.40.290 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains | 0.55 | 44.0 | 4.32e-01 | 100.0% | 82.5% |
| 3a7mA01 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.55 | 43.0 | 4.05e-01 | 84.3% | 73.6% |
| 1wvtA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.54 | 44.0 | 3.77e-01 | 89.9% | 70.3% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.54 | 43.0 | 4.02e-01 | 91.0% | 68.4% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.54 | 41.0 | 3.73e-01 | 83.1% | 71.2% |
| 3mpiA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 42.0 | 3.86e-01 | 86.5% | 71.1% |
| 1iqpA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.54 | 39.0 | 3.88e-01 | 77.5% | 100.0% |
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.53 | 43.0 | 3.98e-01 | 91.0% | 85.6% |
| 3c4wB01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.53 | 36.0 | 2.87e-01 | 74.2% | 32.5% |
| 3h3mA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.52 | 41.0 | 4.11e-01 | 84.3% | 88.8% |
| 5l0wB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 43.0 | 3.88e-01 | 98.9% | 83.3% |
| 5cqgA03 | 1.10.10.2210 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 39.0 | 4.11e-01 | 96.6% | 91.1% |
| 2a2fX01 | 1.10.357.30 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Exocyst complex subunit Sec15 C-terminal domain, N-terminal subdomain | 0.52 | 41.0 | 3.40e-01 | 87.6% | 86.2% |
| 1j1jA01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.52 | 42.0 | 3.81e-01 | 94.4% | 83.3% |
| 2jx0A00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.51 | 39.0 | 3.54e-01 | 84.3% | 72.5% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.51 | 40.0 | 3.77e-01 | 84.3% | 88.8% |
| 1kt1A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 44.0 | 3.76e-01 | 100.0% | 77.8% |
| 3cjdA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 41.0 | 3.32e-01 | 91.0% | 78.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3267734 | 109.3.1.164 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 | 0.74 | 68.0 | 4.90e-01 | 100.0% | 40.0% |
| 3370114 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.73 | 64.0 | 4.21e-01 | 100.0% | 24.3% |
| 3274043 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 65.0 | 4.81e-01 | 100.0% | 45.9% |
| 3935024 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 57.0 | 4.76e-01 | 100.0% | 85.0% |
| 3723165 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.63 | 55.0 | 4.37e-01 | 96.6% | 60.6% |
| 3992200 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.62 | 55.0 | 4.38e-01 | 100.0% | 67.6% |
| 3488600 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 49.0 | 3.47e-01 | 100.0% | 51.3% |
| 3557114 | 604.1.1.66 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_1st_PEPL | 0.56 | 43.0 | 4.09e-01 | 85.4% | 83.6% |
| 3504253 | 601.16.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › GIT1_C | 0.53 | 40.0 | 3.68e-01 | 83.1% | 72.8% |
| 3395628 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 46.0 | 3.76e-01 | 100.0% | 72.6% |
| 3242888 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.52 | 41.0 | 3.66e-01 | 86.5% | 57.0% |
| 3719058 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.52 | 39.0 | 4.04e-01 | 83.1% | 88.2% |
| 3939079 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.52 | 42.0 | 3.17e-01 | 93.3% | 50.6% |
| 3690657 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.51 | 45.0 | 3.87e-01 | 97.8% | 95.0% |
| 3179917 | 7022.1.1.0 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein | 0.51 | 36.0 | 2.97e-01 | 75.3% | 84.0% |
| 3797929 | 109.4.1.95 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 | 0.51 | 44.0 | 3.60e-01 | 100.0% | 68.9% |
| 3204386 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 43.0 | 3.97e-01 | 100.0% | 92.5% |