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F-box_domain
Euk-VirPandoravirus_salinus
F-box_domain__YP_008438828__Pandoravirus_salinus__1349410
Identity
- Accession:
- YP_008438828 ↗
- Protein ID:
- F-box_domain
- Kingdom:
- euk
Quality
73.8
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-57
Domain cluster:
rep: F-box_domain_containing_protein__YP_009482610__Pandoravirus_neocaledonia__2107708__D12-61
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12937.13 best | F-box-like | 32.0 | 1.10e-07 | 88.5% | 85.1% |
D2
high
residues 310-363
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k89A00 | 3.10.20.870 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain | 0.60 | 50.0 | 4.45e-01 | 100.0% | 65.0% |
| 4ijaA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 44.0 | 3.39e-01 | 100.0% | 92.0% |
| 1e3hA03 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.54 | 44.0 | 3.07e-01 | 100.0% | 56.8% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.53 | 44.0 | 3.80e-01 | 100.0% | 68.1% |
| 1jyoE00 | 4.10.1330.10 | Few Secondary Structures › Irregular › non globular Virulence effector SptP fold › non globular Virulence effector SptP domain | 0.53 | 36.0 | 3.07e-01 | 83.3% | 39.2% |
| 3bzvB00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.52 | 36.0 | 3.31e-01 | 100.0% | 51.2% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3512962 | 3075.1.1.1 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › PFU | 0.62 | 53.0 | 4.76e-01 | 100.0% | 70.0% |
| 214471 | 3075.1.1.1 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › PFU | 0.62 | 53.0 | 4.93e-01 | 98.1% | 80.9% |
| 3834352 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.61 | 52.0 | 3.10e-01 | 100.0% | 11.9% |
| 3232510 | 3075.1.1.1 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › PFU | 0.61 | 51.0 | 4.65e-01 | 100.0% | 69.3% |
| 3938541 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.60 | 51.0 | 5.02e-01 | 100.0% | 91.7% |
| 3167354 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.58 | 48.0 | 4.50e-01 | 100.0% | 76.7% |
| 3905302 | 284.1.3.8 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › Fy-3 | 0.56 | 45.0 | 4.09e-01 | 100.0% | 63.5% |
| 4152050 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.56 | 35.0 | 2.50e-01 | 77.8% | 20.6% |
| 4988512 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.55 | 39.0 | 2.79e-01 | 98.1% | 23.6% |
| 4867453 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.55 | 48.0 | 3.97e-01 | 98.1% | 79.4% |
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 44.0 | 4.23e-01 | 98.1% | 98.5% |
| 3968868 | 4104.1.1.1 ↗ | beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like › Bac_export_2 | 0.53 | 36.0 | 3.39e-01 | 100.0% | 53.3% |
| 4989936 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.53 | 42.0 | 3.22e-01 | 92.6% | 42.9% |
| 5046461 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.52 | 38.0 | 2.75e-01 | 85.2% | 51.5% |
| 4983992 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.52 | 37.0 | 2.79e-01 | 98.1% | 27.7% |
| 3325708 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.52 | 35.0 | 2.31e-01 | 74.1% | 14.7% |
| 3839370 | 4104.1.1.1 ↗ | beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like › Bac_export_2 | 0.52 | 36.0 | 3.33e-01 | 100.0% | 54.7% |
| 4963940 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 36.0 | 3.36e-01 | 100.0% | 57.1% |