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F-box_domain

Euk-Vir

Pandoravirus_salinus

F-box_domain__YP_009430148__Pandoravirus_salinus__1349410

Identity

Accession:
YP_009430148 ↗
Protein ID:
F-box_domain
Kingdom:
euk

Quality

71.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-57
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009482610__Pandoravirus_neocaledonia__2107708__D12-61
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.89 76.0 6.21e-01 95.9% 52.9%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.88 69.0 4.24e-01 85.7% 15.8%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.87 65.0 6.71e-01 85.7% 84.8%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.87 77.0 6.32e-01 100.0% 55.7%
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 61.0 6.75e-01 77.6% 97.4%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 76.0 5.97e-01 100.0% 50.0%
4i6jB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 62.0 6.55e-01 77.6% 90.5%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.84 74.0 5.84e-01 100.0% 57.6%
2e31A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.80 70.0 6.53e-01 100.0% 80.6%
3ogkB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.75 50.0 5.30e-01 77.6% 82.9%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.72 55.0 3.82e-01 85.7% 25.3%
1vdyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 49.0 3.55e-01 79.6% 37.9%
3rv1A01 1.20.1270.260 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.66 52.0 4.32e-01 85.7% 50.0%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.63 49.0 4.45e-01 95.9% 97.4%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.63 49.0 4.73e-01 87.8% 94.7%
4abxA02 6.10.140.1090 Special › Helix non-globular › Helix Hairpins › 0.62 44.0 3.73e-01 77.6% 59.8%
8an5A01 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.60 41.0 2.83e-01 73.5% 31.2%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.60 48.0 3.99e-01 95.9% 59.6%
4l3uA00 1.20.1480.40 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 0.59 46.0 3.73e-01 100.0% 56.1%
4l7mA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 44.0 2.89e-01 95.9% 32.6%
4ga4A01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 41.0 3.76e-01 87.8% 71.6%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 36.0 3.28e-01 71.4% 100.0%
2dsjA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.50 39.0 3.61e-01 91.8% 73.1%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3276040 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.97 88.0 7.63e-01 95.9% 67.1%
3833527 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.97 84.0 7.74e-01 93.9% 75.0%
3623404 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.96 87.0 6.31e-01 98.0% 40.9%
3696138 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 88.0 6.85e-01 100.0% 64.2%
4023099 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 87.0 6.35e-01 98.0% 41.7%
3903969 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 88.0 6.99e-01 100.0% 54.4%
3201568 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 80.0 7.02e-01 91.8% 64.3%
3194125 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 86.0 7.14e-01 98.0% 60.0%
3903968 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 86.0 7.30e-01 100.0% 64.0%
3698023 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 86.0 6.32e-01 98.0% 41.7%
3806475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 86.0 7.26e-01 98.0% 64.0%
3439461 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 84.0 7.51e-01 100.0% 72.3%
3531870 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 69.0 6.89e-01 77.6% 76.0%
3358453 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 85.0 7.44e-01 100.0% 68.6%
3644704 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 88.0 7.08e-01 100.0% 58.8%
3652521 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 85.0 7.31e-01 98.0% 65.8%
3522358 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 87.0 7.39e-01 100.0% 65.3%
3685535 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 85.0 7.05e-01 100.0% 60.0%
3250247 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 82.0 7.56e-01 93.9% 76.7%
3209791 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 85.0 7.65e-01 98.0% 73.8%
3248494 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 87.0 7.78e-01 100.0% 75.4%
3225722 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 80.0 5.88e-01 100.0% 39.1%
3257387 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 85.0 6.89e-01 100.0% 56.5%
3886321 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 84.0 6.98e-01 100.0% 60.0%
3861026 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 84.0 6.52e-01 100.0% 49.0%
3204462 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 85.0 6.16e-01 100.0% 40.0%
4500280 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 87.0 7.00e-01 100.0% 68.2%
3810074 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 84.0 7.00e-01 98.0% 60.8%
3472074 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 86.0 6.69e-01 100.0% 51.6%
3781279 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 84.0 6.96e-01 98.0% 61.3%
4013644 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 86.0 6.80e-01 100.0% 65.6%
3730967 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 84.0 6.41e-01 100.0% 47.6%
3726578 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 83.0 6.74e-01 98.0% 57.6%
3301883 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 84.0 7.01e-01 100.0% 62.5%
3348915 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 84.0 6.28e-01 100.0% 44.5%
3879992 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 83.0 6.89e-01 98.0% 60.0%
3762363 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.91 81.0 4.48e-01 95.9% 88.6%
3646821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 83.0 7.12e-01 100.0% 66.7%
3742900 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 82.0 5.79e-01 98.0% 35.6%
3854965 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 83.0 6.65e-01 100.0% 54.4%
4022899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 83.0 6.41e-01 100.0% 50.0%
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 80.0 6.99e-01 95.9% 67.1%
3407033 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 83.0 7.07e-01 100.0% 65.3%
3595717 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 80.0 7.19e-01 95.9% 72.3%
4019682 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 81.0 6.44e-01 100.0% 58.9%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 82.0 6.34e-01 100.0% 49.0%
3446581 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 81.0 6.65e-01 100.0% 57.6%
3261282 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 82.0 7.85e-01 100.0% 89.1%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 81.0 6.67e-01 100.0% 57.6%
3631167 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 79.0 6.53e-01 100.0% 56.5%
4545458 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 82.0 6.33e-01 100.0% 49.0%
3740971 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 81.0 6.62e-01 100.0% 57.6%
3259869 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 78.0 6.45e-01 100.0% 56.5%
3312720 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 81.0 6.93e-01 100.0% 65.3%
3420610 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 77.0 7.39e-01 100.0% 85.5%
3428197 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.88 80.0 6.63e-01 100.0% 60.0%
3845951 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 78.0 6.44e-01 98.0% 56.5%
3617289 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 80.0 7.48e-01 100.0% 81.7%
3803973 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 6.97e-01 100.0% 70.0%
3443639 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 75.0 7.53e-01 93.9% 92.0%
3726840 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 78.0 6.70e-01 100.0% 64.0%
3301272 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 5.98e-01 100.0% 45.5%
3256545 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 78.0 7.12e-01 100.0% 75.4%
4023603 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 79.0 6.95e-01 100.0% 70.0%
3731690 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 79.0 6.62e-01 100.0% 66.3%
3450709 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 69.0 6.90e-01 87.8% 86.0%
3187719 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 77.0 6.64e-01 100.0% 68.0%
3429995 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 76.0 6.66e-01 100.0% 67.1%
3344543 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 76.0 6.33e-01 100.0% 57.6%
3715255 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 75.0 7.21e-01 100.0% 87.3%
3643181 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 76.0 6.55e-01 100.0% 65.3%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 75.0 6.29e-01 95.9% 58.7%
3654886 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 75.0 6.48e-01 100.0% 64.0%
3726236 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 77.0 6.33e-01 100.0% 62.4%
3617852 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 76.0 6.73e-01 100.0% 70.0%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 73.0 6.21e-01 100.0% 60.3%
3363836 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 75.0 6.16e-01 100.0% 56.5%
3186415 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 75.0 6.22e-01 100.0% 68.2%
3507975 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 75.0 4.50e-01 100.0% 91.3%
3729172 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 74.0 5.68e-01 100.0% 68.2%
3821430 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 75.0 6.31e-01 100.0% 61.3%
4021336 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 75.0 7.00e-01 100.0% 83.3%
3176338 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 76.0 6.36e-01 100.0% 63.7%
3320433 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 72.0 6.80e-01 98.0% 80.0%
3738910 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 75.0 6.18e-01 100.0% 63.5%
3664817 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 72.0 6.12e-01 100.0% 60.0%
3174979 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 72.0 6.19e-01 100.0% 61.3%
3454872 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 67.0 6.69e-01 89.8% 90.0%
3355899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 73.0 6.12e-01 100.0% 58.8%
3651806 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 71.0 6.08e-01 98.0% 60.0%
3451260 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 71.0 6.68e-01 98.0% 81.7%
3422328 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 72.0 5.89e-01 100.0% 55.3%
3235397 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 69.0 6.44e-01 98.0% 76.7%
3826054 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 72.0 6.94e-01 100.0% 90.9%
3810743 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.81 71.0 4.47e-01 100.0% 29.4%
3301911 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 70.0 5.77e-01 100.0% 55.3%
3644174 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 68.0 5.92e-01 100.0% 62.7%
3829887 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 64.0 6.25e-01 91.8% 85.5%
3819291 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 63.0 6.10e-01 91.8% 83.6%
3466887 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 65.0 6.53e-01 98.0% 96.0%
D2 high residues 302-365
PDB
Domain cluster: rep: F-box_domain__YP_008438828__Pandoravirus_salinus__1349410__D310-363