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F-box_domain_containing_protein
Euk-VirPandoravirus_dulcis
F-box_domain_containing_protein__YP_008318627__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_008318627 ↗
- Protein ID:
- F-box_domain_containing_protein
- Kingdom:
- euk
Quality
79.5
mean pLDDT
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 665-721
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7xceA01 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.82 | 71.0 | 4.53e-01 | 93.0% | 23.0% |
| 2zgdA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.82 | 70.0 | 5.80e-01 | 93.0% | 57.7% |
| 5eidA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.81 | 70.0 | 5.33e-01 | 93.0% | 45.5% |
| 4qfvC02 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.81 | 73.0 | 6.96e-01 | 98.2% | 90.8% |
| 3b7bB00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.81 | 70.0 | 4.56e-01 | 93.0% | 25.0% |
| 4hi8A00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.80 | 68.0 | 4.76e-01 | 93.0% | 32.9% |
| 3ehrA02 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.79 | 71.0 | 5.51e-01 | 98.2% | 48.3% |
| 2dznA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.79 | 71.0 | 4.62e-01 | 98.2% | 25.7% |
| 3lvqE03 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.76 | 66.0 | 6.57e-01 | 96.5% | 94.9% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.70 | 59.0 | 5.04e-01 | 100.0% | 77.0% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 51.0 | 4.96e-01 | 82.5% | 93.5% |
| 2fupA00 | 1.20.58.300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like | 0.62 | 47.0 | 3.80e-01 | 87.7% | 80.3% |
| 3nrwA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.60 | 45.0 | 3.71e-01 | 80.7% | 60.6% |
| 3kt4A02 | 3.60.130.20 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain | 0.57 | 42.0 | 2.70e-01 | 82.5% | 27.8% |
| 1ak2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 45.0 | 3.05e-01 | 93.0% | 35.5% |
| 1eiaA01 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.53 | 43.0 | 3.46e-01 | 100.0% | 46.6% |
| 4cgyA02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.51 | 40.0 | 2.77e-01 | 86.0% | 86.8% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 37.0 | 3.23e-01 | 82.5% | 54.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4003617 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.86 | 74.0 | 5.06e-01 | 93.0% | 31.9% |
| 3911406 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.83 | 72.0 | 4.75e-01 | 93.0% | 27.8% |
| 3723163 | 109.3.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank | 0.83 | 70.0 | 5.29e-01 | 93.0% | 47.7% |
| 4325700 | 109.3.1.164 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 | 0.82 | 69.0 | 4.93e-01 | 93.0% | 35.0% |
| 4867502 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.81 | 74.0 | 5.94e-01 | 100.0% | 97.2% |
| 3501165 | 109.3.1.164 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 | 0.81 | 69.0 | 4.41e-01 | 93.0% | 21.2% |
| 3895445 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.79 | 71.0 | 5.35e-01 | 100.0% | 43.8% |
| 3474549 | 109.3.1.163 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 | 0.78 | 69.0 | 4.20e-01 | 100.0% | 16.5% |
| 3385165 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.72 | 63.0 | 4.22e-01 | 100.0% | 29.6% |
| 3340975 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.58 | 48.0 | 3.76e-01 | 100.0% | 41.4% |
| 4452303 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 41.0 | 3.93e-01 | 78.9% | 89.2% |
| 5048651 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.55 | 49.0 | 4.20e-01 | 100.0% | 68.9% |
| 3330762 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.53 | 46.0 | 3.71e-01 | 100.0% | 71.3% |
| 4954772 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.51 | 38.0 | 3.86e-01 | 78.9% | 90.9% |
D2
medium
residues 282-373
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4leuA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.68 | 57.0 | 4.56e-01 | 90.2% | 66.5% |
| 3m0fB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 46.0 | 4.18e-01 | 84.8% | 88.6% |
| 2db0B00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 51.0 | 3.83e-01 | 100.0% | 57.5% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 40.0 | 3.79e-01 | 77.2% | 84.1% |
| 2cz2A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 44.0 | 4.05e-01 | 92.4% | 87.3% |
| 2l5aA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.53 | 36.0 | 2.79e-01 | 71.7% | 77.3% |
| 5l0wB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 43.0 | 3.90e-01 | 96.7% | 70.3% |
| 2o8pA00 | 1.20.190.20 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain | 0.51 | 43.0 | 3.36e-01 | 96.7% | 71.7% |
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.51 | 41.0 | 3.58e-01 | 93.5% | 63.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3185031 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 47.0 | 4.01e-01 | 89.1% | 86.1% |
| 138422 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.57 | 46.0 | 4.20e-01 | 88.0% | 87.3% |
| 3465019 | 601.1.1.54 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF4220 | 0.56 | 46.0 | 3.81e-01 | 93.5% | 70.3% |
| 59161 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.55 | 41.0 | 3.78e-01 | 79.3% | 88.4% |
| 3296365 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.54 | 42.0 | 3.56e-01 | 87.0% | 58.8% |
| 3843379 | 109.4.1.3420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_7, TPR_19, ARM_TT21_C, ARM_TT21_5th | 0.53 | 46.0 | 3.15e-01 | 98.9% | 86.7% |
| 3969234 | 109.1.1.26 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_N_3 | 0.53 | 40.0 | 3.22e-01 | 84.8% | 52.7% |
| 3194525 | 109.4.1.1588 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27584, PF27595, PF30849 | 0.52 | 44.0 | 2.50e-01 | 98.9% | 16.3% |
D3
medium
residues 407-490
Domain cluster:
rep: ankyrin_repeat_protein__YP_009120761__Pandoravirus_inopinatum__1605721__D416-499