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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_dulcis

F-box_domain_containing_protein__YP_008318670__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008318670 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

71.6 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 98-113_150-239
PDB
Domain cluster: representative
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4587154 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.51 35.0 3.24e-01 71.7% 98.7%
3899230 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 25.0 2.64e-01 71.7% 50.0%
D2 medium residues 114-149_240-337
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_008319469__Pandoravirus_dulcis__1349409__D106-162_314-358
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF02493.27 best MORN 15.4 1.90e-02 14.9% 73.9%
PF02493.27 MORN 14.9 2.90e-02 13.4% 60.9%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a1nA01 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.51 37.0 3.04e-01 73.9% 91.3%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3601199 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.85 43.0 4.62e-01 75.4% 56.7%
3712317 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.85 46.0 4.27e-01 73.1% 45.0%
3593136 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.83 45.0 4.07e-01 74.6% 41.7%
3531694 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.78 46.0 3.57e-01 74.6% 30.0%
4308299 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.76 44.0 4.34e-01 74.6% 53.8%
3875250 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.76 44.0 4.08e-01 74.6% 47.3%
3763479 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.76 44.0 3.48e-01 74.6% 30.6%
3598915 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.74 45.0 4.35e-01 71.6% 55.3%
3702839 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.65 46.0 4.40e-01 74.6% 64.0%
3706026 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.65 39.0 3.40e-01 73.9% 39.5%
4675848 9.2.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.54 37.0 3.72e-01 73.1% 67.6%
D3 medium residues 338-406
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009482379__Pandoravirus_neocaledonia__2107708__D289-374
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.67 53.0 4.25e-01 100.0% 43.5%
1mufA01 2.20.110.10 Mainly Beta › Single Sheet › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 0.63 54.0 4.69e-01 100.0% 61.9%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 40.0 3.08e-01 72.5% 38.9%
7pk0A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 40.0 3.36e-01 73.9% 54.6%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 46.0 3.52e-01 100.0% 37.3%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.55 40.0 3.19e-01 78.3% 76.4%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 46.0 3.62e-01 100.0% 87.1%
5c82A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 46.0 3.53e-01 100.0% 62.9%
4cyfA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.53 42.0 2.84e-01 91.3% 52.9%
5h8iI00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.51 38.0 2.66e-01 85.5% 28.3%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.20e-01 78.3% 90.6%
3icaB00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 40.0 2.97e-01 89.9% 85.9%
3d3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 43.0 3.43e-01 100.0% 51.6%
4fd5A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 42.0 3.11e-01 100.0% 72.2%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.50 43.0 3.32e-01 100.0% 42.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976807 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.70 57.0 3.98e-01 95.7% 27.7%
3968348 77.2.1.5 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN_2 0.69 60.0 4.55e-01 100.0% 41.2%
5081937 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.68 59.0 5.30e-01 100.0% 69.5%
3965839 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.67 58.0 4.44e-01 100.0% 42.6%
3287702 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.66 54.0 4.55e-01 94.2% 53.0%
3386526 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.65 57.0 4.36e-01 100.0% 44.8%
4877157 77.1.1.1 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.63 49.0 3.27e-01 100.0% 19.3%
4031984 3894.1.1.1 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.62 51.0 4.28e-01 100.0% 51.2%
4348598 3894.1.1.6 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Glyco_trans_A_1 0.62 54.0 4.36e-01 100.0% 55.6%
4200177 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.61 52.0 4.33e-01 100.0% 52.3%
1780243 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.61 52.0 3.63e-01 100.0% 27.0%
2723017 3894.1.1.0 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain 0.60 49.0 4.18e-01 100.0% 54.0%
2722572 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.59 50.0 4.14e-01 100.0% 54.8%
3475183 2484.1.1.74 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tex_YqgF 0.59 40.0 2.91e-01 71.0% 46.0%
4226766 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.59 51.0 4.19e-01 100.0% 52.3%
4949644 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.57 43.0 3.02e-01 85.5% 30.8%
3624211 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.57 47.0 3.59e-01 100.0% 38.8%
4883782 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.55 41.0 3.06e-01 84.1% 50.5%
3421534 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.54 47.0 3.48e-01 100.0% 47.0%
4951310 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 2.89e-01 100.0% 30.0%
3909185 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 41.0 3.03e-01 87.0% 42.4%
5070420 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 45.0 3.68e-01 100.0% 72.9%
3319355 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 37.0 3.28e-01 76.8% 73.6%
3621296 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 40.0 3.49e-01 85.5% 80.6%
4021183 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 42.0 2.86e-01 94.2% 86.9%
3433666 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.51 42.0 3.22e-01 100.0% 44.1%
3794299 11.1.1.545 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Chromosome_seg 0.51 42.0 3.21e-01 95.7% 91.7%
3233389 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.50 41.0 2.72e-01 100.0% 34.6%