←Back to structures

F-box_domain_containing_protein

Euk-Vir

Pandoravirus_dulcis

F-box_domain_containing_protein__YP_008319549__Pandoravirus_dulcis__1349409

Identity

Accession:: YP_008319549 ↗
Protein ID:: F-box_domain_containing_protein
Kingdom:: euk

Quality

64.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 71-124

PDB

Domain cluster: rep: F-box_domain_containing_protein__YP_009482610__Pandoravirus_neocaledonia__2107708__D12-61

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12937.13 best	F-box-like	25.8	1.00e-05	72.2%	80.8%

D2 medium residues 125-275

PDB

D3 medium residues 276-327

PDB

D4 medium residues 383-480

PDB

Domain cluster: rep: F-box_domain_containing_protein__YP_008319550__Pandoravirus_dulcis__1349409__D368-429_441-475

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1hdhA02	3.30.1120.10	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain ›	0.64	36.0	4.02e-01	91.8%	70.1%
1ospO02	3.90.930.1	Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 ›	0.60	43.0	3.79e-01	75.5%	79.5%
3lxqA01	3.30.1120.80	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain ›	0.59	31.0	3.10e-01	85.7%	47.5%
3wirA03	2.60.420.10	Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3	0.59	30.0	3.53e-01	82.7%	69.6%
3kljA03	3.30.390.30	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain	0.58	36.0	3.92e-01	78.6%	74.7%
4g7nA01	3.30.1120.120	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain ›	0.55	40.0	3.76e-01	90.8%	62.0%
2m3xC02	2.40.10.360	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.54	33.0	3.85e-01	79.6%	87.0%
2eaqA00	2.30.42.10	Mainly Beta › Roll › Pdz3 Domain › PDZ domain	0.54	38.0	3.99e-01	81.6%	82.0%
1umzA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	47.0	3.49e-01	100.0%	85.4%
1avaA02	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.52	27.0	3.33e-01	91.8%	81.0%
2yyzA02	2.40.50.100	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	0.51	25.0	3.02e-01	70.4%	72.4%
1omoA01	3.30.1780.10	Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1	0.50	43.0	3.80e-01	96.9%	72.5%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3900936	247.1.1.5 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C	0.57	40.0	2.88e-01	71.4%	82.2%
2696975	6129.1.1.0 ↗	beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family	0.57	35.0	2.81e-01	76.5%	30.5%
1780243	3894.1.1.3 ↗	beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M	0.52	39.0	2.91e-01	90.8%	31.0%
3174935	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.52	39.0	2.63e-01	80.6%	24.1%
4069542	63.1.1.3 ↗	beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH	0.51	39.0	3.25e-01	82.7%	74.9%
3993409	63.1.1.3 ↗	beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH	0.50	38.0	3.36e-01	81.6%	83.3%

D5 medium residues 499-643

PDB

Domain cluster: rep: F-box_domain__YP_008436813__Pandoravirus_salinus__1349410__D445-561

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2e87A01	1.20.120.1190	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.67	47.0	4.52e-01	71.0%	89.4%
2icwG01	1.20.120.390	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1	0.60	40.0	4.36e-01	85.5%	79.0%
1fouA01	1.10.246.30	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.60	30.0	4.04e-01	84.8%	93.2%
2l6hA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.58	41.0	4.05e-01	73.1%	84.4%
3hl6A02	1.20.58.700	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	42.0	4.61e-01	90.3%	96.5%
1jmwA00	1.20.120.30	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain	0.52	37.0	3.70e-01	71.0%	89.0%
2np5D00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	46.0	4.54e-01	100.0%	95.6%
2kmfA01	1.20.58.810	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27	0.51	35.0	4.03e-01	73.8%	100.0%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3937240	376.1.1.21 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2	0.70	33.0	4.66e-01	73.8%	92.9%
3342185	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.65	38.0	4.59e-01	97.2%	87.4%
3692487	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.62	36.0	4.28e-01	97.2%	83.0%
3430765	376.1.1.20 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX	0.61	37.0	4.42e-01	100.0%	88.0%
3457996	376.1.1.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box	0.61	38.0	4.25e-01	97.9%	78.3%
3828987	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.61	37.0	4.42e-01	96.6%	90.5%
3431026	376.1.1.23 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2	0.60	38.0	4.61e-01	100.0%	96.8%
3255227	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.60	38.0	4.57e-01	98.6%	95.8%
3326051	376.1.1.23 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2	0.60	36.0	4.34e-01	96.6%	90.5%
3380766	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.60	36.0	4.25e-01	100.0%	87.0%
3683169	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.59	36.0	4.27e-01	100.0%	88.0%
3837562	376.1.1.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box	0.57	37.0	4.29e-01	96.6%	89.5%
4995421	3281.1.2.1 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit 8 (Nqo8)-related › NADHdh	0.57	44.0	3.47e-01	81.4%	63.1%
3685972	109.3.1.148 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Goodbye	0.54	42.0	3.92e-01	81.4%	81.1%
5032306	601.7.1.2 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN	0.53	37.0	3.79e-01	71.0%	89.6%
4927292	5049.1.2.1 ↗	alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Urea transporter › UT	0.51	44.0	3.41e-01	93.8%	94.8%
3979183	628.1.1.2 ↗	alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FadR_C	0.51	43.0	4.23e-01	91.7%	94.4%
3739126	601.1.2.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608)	0.50	45.0	4.35e-01	97.2%	97.0%

D6 medium residues 671-687_734-830

PDB

Domain cluster: rep: F-box_domain__YP_008438009__Pandoravirus_salinus__1349410__D639-658_678-702_740-841