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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_macleodensis

F-box_domain_containing_protein__YP_009480795__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009480795 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

44.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-103
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 32.3 9.10e-08 63.3% 93.6%
PF00646.39 F-box 21.5 2.40e-04 58.2% 97.7%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.81 60.0 5.82e-01 100.0% 70.1%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.69 63.0 5.80e-01 100.0% 88.9%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.68 61.0 5.94e-01 100.0% 96.6%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.64 44.0 3.39e-01 72.2% 82.8%
1ug3A02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 49.0 4.27e-01 87.3% 92.2%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.62 52.0 3.55e-01 89.9% 36.7%
3qdnA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 39.0 3.84e-01 100.0% 64.3%
1rz4A01 1.25.40.250 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 0.58 41.0 3.65e-01 75.9% 59.2%
4dveA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.57 49.0 3.78e-01 98.7% 70.9%
3k9iA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 39.0 3.62e-01 100.0% 57.3%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 40.0 3.70e-01 77.2% 91.1%
5fzsA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 36.0 3.36e-01 100.0% 51.4%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.53 39.0 3.27e-01 78.5% 73.6%
5mmjo00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.52 39.0 4.05e-01 92.4% 84.0%
2lahA00 1.25.40.430 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 39.0 3.22e-01 84.8% 61.3%
2c2lA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 42.0 3.55e-01 89.9% 70.7%
1zp2A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 35.0 3.19e-01 73.4% 75.7%
8a0rA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 37.0 3.26e-01 79.7% 89.2%
1fx8A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.51 44.0 3.16e-01 98.7% 85.4%
5lnkJ01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.50 33.0 2.70e-01 72.2% 32.0%
ECOD (96)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3261282 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 61.0 7.25e-01 75.9% 100.0%
3358453 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 70.0 7.46e-01 100.0% 92.9%
3276040 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 65.0 6.92e-01 100.0% 85.7%
3781279 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 75.0 7.50e-01 98.7% 90.0%
3806475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 71.0 7.34e-01 98.7% 90.7%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 67.0 6.55e-01 92.4% 75.3%
3248494 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 64.0 7.05e-01 97.5% 93.8%
3595717 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 63.0 6.93e-01 93.7% 92.3%
3810074 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 71.0 7.14e-01 98.7% 87.3%
3652521 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 73.0 7.64e-01 100.0% 98.6%
3711287 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 68.0 6.10e-01 100.0% 63.5%
3472074 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 73.0 6.79e-01 100.0% 75.8%
3762363 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 68.0 3.97e-01 93.7% 12.0%
3845951 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 68.0 6.67e-01 94.9% 80.0%
3407033 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 72.0 7.41e-01 100.0% 96.0%
3770072 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 72.0 6.84e-01 100.0% 80.0%
3429995 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 64.0 6.66e-01 100.0% 89.0%
3886321 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 71.0 7.08e-01 97.5% 88.7%
3738910 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 69.0 6.73e-01 100.0% 83.5%
3301272 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 71.0 6.24e-01 100.0% 65.5%
3453805 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 71.0 6.40e-01 100.0% 69.5%
3646821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 70.0 7.24e-01 100.0% 96.0%
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 65.0 6.94e-01 100.0% 94.3%
3901480 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 71.0 7.13e-01 100.0% 91.3%
3335288 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 65.0 5.71e-01 100.0% 58.3%
3821430 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 69.0 6.87e-01 100.0% 87.5%
3320433 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 60.0 6.73e-01 92.4% 100.0%
3186415 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 73.0 7.13e-01 100.0% 89.4%
3617852 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 67.0 7.08e-01 98.7% 100.0%
3654886 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 66.0 6.80e-01 100.0% 92.0%
3250931 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 66.0 6.76e-01 100.0% 92.0%
3664299 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 73.0 6.79e-01 97.5% 88.4%
3879992 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 67.0 6.73e-01 98.7% 88.7%
3473623 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 65.0 6.33e-01 100.0% 81.2%
3903969 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 68.0 6.48e-01 100.0% 80.0%
3176338 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 66.0 6.61e-01 100.0% 88.7%
3643181 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 64.0 6.59e-01 100.0% 92.0%
3363533 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 69.0 7.12e-01 100.0% 100.0%
3644704 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 73.0 7.16e-01 100.0% 92.9%
3350782 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 68.0 4.42e-01 100.0% 23.1%
3380116 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 62.0 6.66e-01 98.7% 98.5%
3706611 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 58.0 6.17e-01 81.0% 88.6%
3812115 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 66.0 6.91e-01 97.5% 100.0%
3257387 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 66.0 6.49e-01 100.0% 84.7%
3373180 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 69.0 4.70e-01 100.0% 29.9%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 70.0 7.02e-01 98.7% 96.2%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 68.0 6.93e-01 100.0% 97.4%
3664817 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 67.0 6.67e-01 96.2% 92.5%
3729172 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 70.0 6.20e-01 100.0% 84.5%
3421442 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 71.0 6.75e-01 100.0% 98.9%
3301883 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 69.0 6.95e-01 100.0% 97.5%
3259869 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 68.0 6.64e-01 100.0% 90.6%
3344543 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 68.0 6.68e-01 100.0% 91.8%
4545458 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 69.0 6.34e-01 100.0% 89.0%
3544730 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 64.0 6.17e-01 100.0% 82.2%
3739768 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 67.0 6.61e-01 100.0% 98.8%
4019682 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 68.0 6.38e-01 100.0% 89.5%
3378208 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 62.0 4.29e-01 94.9% 29.0%
3812206 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 62.0 6.40e-01 97.5% 98.7%
3272348 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 67.0 6.04e-01 100.0% 88.6%
3194125 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 66.0 6.66e-01 100.0% 95.0%
3668652 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 64.0 6.55e-01 100.0% 100.0%
3696138 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 67.0 6.27e-01 100.0% 87.4%
3331958 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 67.0 6.28e-01 100.0% 83.2%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 66.0 6.10e-01 98.7% 88.0%
3428197 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 65.0 6.55e-01 97.5% 95.0%
3346715 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 63.0 6.44e-01 100.0% 98.7%
3200311 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 61.0 6.10e-01 100.0% 90.0%
3363836 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 66.0 6.48e-01 100.0% 92.9%
3328883 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 63.0 6.34e-01 100.0% 95.0%
4023099 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 68.0 5.87e-01 100.0% 83.5%
3491937 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 67.0 6.41e-01 100.0% 92.2%
3623404 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 67.0 5.81e-01 100.0% 80.0%
3347843 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 63.0 6.31e-01 100.0% 96.2%
3446581 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 66.0 6.50e-01 100.0% 94.1%
3311874 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 63.0 6.46e-01 98.7% 100.0%
3698023 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 67.0 5.79e-01 100.0% 80.9%
3171955 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.72 66.0 6.19e-01 100.0% 96.8%
3787916 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 61.0 5.62e-01 100.0% 73.0%
3527636 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 61.0 5.89e-01 97.5% 83.1%
3902311 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 67.0 6.50e-01 100.0% 98.8%
3827406 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 61.0 6.02e-01 96.2% 88.2%
4022899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 65.0 5.95e-01 100.0% 79.0%
3536855 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 63.0 5.93e-01 97.5% 91.6%
3301911 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 61.0 6.03e-01 100.0% 90.6%
3458027 109.7.1.9 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › TPR_27 0.69 55.0 4.64e-01 84.8% 74.6%
3644174 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 59.0 6.11e-01 96.2% 97.3%
3355899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 63.0 6.21e-01 100.0% 97.6%
3854965 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 64.0 6.10e-01 100.0% 98.9%
3917759 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 63.0 5.83e-01 100.0% 87.0%
3312720 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.69 60.0 6.17e-01 98.7% 98.7%
3273645 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 61.0 6.10e-01 100.0% 98.8%
3442747 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 59.0 5.58e-01 97.5% 88.4%
3823956 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 57.0 4.43e-01 97.5% 49.7%
4079912 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.52 43.0 3.78e-01 94.9% 60.0%
4993526 101.11.1.13 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › EMC6_arch 0.50 36.0 3.58e-01 78.5% 73.9%
D2 medium residues 104-180_221-235_270-289
PDB