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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_macleodensis

F-box_domain_containing_protein__YP_009481050__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481050 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

70.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 616-692_705-819
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.80 41.0 5.78e-01 83.9% 99.0%
2j8iA01 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.73 40.0 5.34e-01 88.0% 100.0%
2xt2B00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.68 46.0 4.68e-01 91.1% 68.6%
2f3lA00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.67 45.0 5.42e-01 87.0% 97.7%
3nb2A01 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.64 49.0 5.15e-01 88.5% 85.3%
2w7zA00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.64 48.0 4.71e-01 90.1% 71.0%
2j8kA01 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.64 48.0 5.04e-01 88.5% 84.4%
2bm5B00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.62 46.0 4.82e-01 89.1% 81.1%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.61 38.0 4.18e-01 89.1% 75.2%
2qyuA01 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.59 46.0 5.00e-01 90.1% 96.8%
2xtwD00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.59 47.0 4.60e-01 91.1% 76.4%
3eqnA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.55 48.0 3.84e-01 91.1% 64.9%
3bh7B01 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.54 39.0 3.99e-01 90.6% 75.1%
3gq8A01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.54 46.0 3.45e-01 91.1% 48.3%
3n6zA01 2.160.20.110 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.53 45.0 4.06e-01 91.1% 86.0%
5gkqB01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.52 44.0 3.46e-01 89.1% 59.4%
7dmkA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.52 44.0 3.79e-01 90.1% 69.6%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.52 45.0 3.24e-01 93.2% 58.4%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.51 45.0 3.26e-01 93.8% 59.1%
4nk6A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 47.0 3.64e-01 100.0% 72.9%
1ru4A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 45.0 3.51e-01 93.2% 79.0%
1rmgA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 46.0 3.59e-01 98.4% 96.2%
4hwvB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 46.0 3.47e-01 100.0% 67.1%
1vblA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 45.0 3.53e-01 96.9% 93.3%
4mxnB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 43.0 4.08e-01 89.6% 91.2%
5gkdA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 44.0 3.82e-01 91.7% 83.2%
2vjiA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.50 42.0 3.28e-01 90.1% 58.7%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.88 41.0 5.83e-01 81.2% 89.0%
4969960 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.87 43.0 6.31e-01 90.1% 100.0%
3284600 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.86 40.0 6.02e-01 82.3% 98.9%
3199689 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.85 41.0 5.70e-01 81.8% 90.0%
4804849 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.85 31.0 5.48e-01 72.4% 100.0%
3286791 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.81 45.0 5.96e-01 91.1% 96.4%
4856486 207.9.1.5 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › LD_SV2 0.75 42.0 5.55e-01 90.6% 96.4%
4926840 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.73 48.0 5.30e-01 91.1% 80.0%
3584966 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.73 45.0 5.76e-01 87.5% 100.0%
3259179 207.9.1.6 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.73 48.0 5.28e-01 91.7% 80.0%
3414943 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.71 48.0 4.85e-01 90.6% 67.2%
4025678 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.71 45.0 5.33e-01 89.6% 89.6%
3598843 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.70 48.0 4.89e-01 92.2% 70.8%
1176421 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.70 42.0 5.24e-01 91.7% 96.6%
3967223 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.70 46.0 5.09e-01 86.5% 80.5%
4973402 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.69 49.0 4.80e-01 87.5% 66.8%
5057836 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.69 46.0 4.77e-01 89.6% 71.1%
4308690 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.69 47.0 5.47e-01 88.0% 94.3%
3307274 207.9.1.6 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.69 48.0 5.42e-01 88.5% 90.7%
4996490 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.68 48.0 5.14e-01 95.8% 81.2%
143698 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.68 47.0 5.46e-01 88.5% 94.4%
140987 207.9.1.6 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.68 46.0 4.63e-01 90.6% 67.5%
3427990 207.9.1.7 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_3 0.68 47.0 5.30e-01 87.0% 90.0%
4959183 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.66 49.0 4.70e-01 90.1% 66.4%
3327690 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.66 46.0 5.03e-01 87.5% 84.4%
1788824 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.66 49.0 4.54e-01 90.1% 62.2%
3249938 207.9.1.6 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.66 49.0 4.75e-01 90.1% 69.5%
3449922 207.9.1.6 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.65 48.0 5.01e-01 87.5% 80.0%
3278252 207.9.1.6 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.65 49.0 4.78e-01 90.1% 71.7%
3974579 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.65 48.0 4.93e-01 90.1% 78.4%
3589131 207.9.1.6 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.65 48.0 4.70e-01 90.1% 69.5%
4683546 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.64 48.0 4.59e-01 90.1% 66.4%
3245110 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.64 48.0 5.02e-01 90.1% 81.7%
4004554 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.64 48.0 5.09e-01 90.1% 84.6%
3238891 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.64 48.0 4.86e-01 89.6% 76.8%
3926071 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.64 48.0 5.35e-01 90.6% 95.4%
1630684 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.64 49.0 5.00e-01 88.5% 81.0%
134728 207.9.1.6 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.64 48.0 4.71e-01 90.1% 71.0%
3937180 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.64 47.0 5.00e-01 90.6% 83.8%
4527010 207.9.1.6 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.64 48.0 5.03e-01 90.6% 82.2%
4340140 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.63 49.0 4.07e-01 90.1% 47.5%
3214089 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.63 47.0 4.66e-01 89.6% 72.5%
3539224 207.9.1.6 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.63 48.0 4.90e-01 90.1% 79.5%
3708646 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.63 51.0 4.86e-01 95.8% 72.3%
4542541 207.9.1.8 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_3, Pentapeptide_4 0.63 47.0 4.78e-01 90.1% 77.4%
5018780 207.9.1.3 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide_3 0.63 48.0 4.76e-01 90.1% 75.0%
4027041 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.63 46.0 4.86e-01 89.6% 82.9%
7227 207.9.1.7 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_3 0.62 47.0 4.85e-01 90.6% 81.2%
5017863 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.62 48.0 4.10e-01 91.7% 52.1%
3248661 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.62 47.0 4.49e-01 90.1% 68.4%
4944592 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.62 46.0 3.82e-01 91.1% 44.8%
1905833 207.9.1.6 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 0.62 47.0 4.69e-01 87.0% 76.5%
454318 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.61 46.0 4.52e-01 88.5% 71.5%
4982073 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.59 46.0 3.77e-01 91.1% 45.7%
3600332 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.57 48.0 4.77e-01 90.1% 84.5%
4968345 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.56 49.0 4.90e-01 90.6% 90.8%
4981702 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.55 43.0 3.52e-01 91.7% 44.6%
4506663 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.55 46.0 4.82e-01 90.1% 95.4%
3704197 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.55 48.0 4.56e-01 91.1% 83.6%
5060892 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.55 45.0 3.78e-01 89.6% 52.7%
3268714 207.9.1.7 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_3 0.54 50.0 4.86e-01 97.9% 88.3%
3613797 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.54 47.0 4.54e-01 92.2% 84.4%
3266272 207.2.1.62 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › G8+CEMIP_beta-hel 0.54 48.0 3.35e-01 96.9% 71.6%
3273051 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.54 46.0 4.07e-01 90.1% 74.8%
5034971 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.53 45.0 4.22e-01 91.1% 73.5%
4981440 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.53 45.0 3.93e-01 90.1% 59.7%
4969461 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.53 45.0 4.05e-01 89.6% 68.8%
4957368 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.53 42.0 4.06e-01 87.5% 75.2%
5061716 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.52 44.0 3.92e-01 90.1% 73.6%
3256108 207.2.1.43 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Chlam_PMP 0.52 45.0 4.01e-01 92.2% 83.0%
5019819 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.51 45.0 3.72e-01 92.2% 63.7%
5033010 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.51 43.0 3.45e-01 89.6% 50.9%
5050079 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.51 43.0 4.05e-01 89.6% 79.6%
4969216 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.51 43.0 3.71e-01 89.6% 60.3%
5040116 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.51 43.0 3.33e-01 89.6% 44.4%
4981814 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.51 43.0 3.49e-01 92.2% 48.7%
4989914 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.51 43.0 3.37e-01 89.6% 51.4%
5041560 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.50 42.0 3.32e-01 89.6% 47.4%
D2 medium residues 104-279
PDB
Domain cluster: rep: Pentapeptide_domain_containing_protein__YP_009483488__Pandoravirus_quercus__2107709__D141-282
D3 medium residues 494-543
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.84 57.0 4.51e-01 78.0% 37.2%
2lxhC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.74 48.0 4.58e-01 80.0% 56.9%
2cszA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.74 52.0 4.53e-01 74.0% 51.3%
1ul4A01 4.10.1100.10 Few Secondary Structures › Irregular › DNA-binding domain of squamosa promoter binding protein-like 12 (lacking the second zinc- binding site) › Transcription factor, SBP-box domain 0.73 61.0 5.58e-01 92.0% 96.9%
2k16A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.69 54.0 4.76e-01 92.0% 58.7%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.68 41.0 4.60e-01 84.0% 90.9%
1v6gA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.67 45.0 3.87e-01 74.0% 43.2%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 57.0 4.24e-01 96.0% 42.3%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 44.0 4.34e-01 72.0% 83.3%
2luyA01 3.30.60.210 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Stc1 domain 0.64 43.0 4.14e-01 70.0% 91.2%
2jrjA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 44.0 4.36e-01 98.0% 71.2%
1wffA00 4.10.1110.10 Few Secondary Structures › Irregular › Zf-an1 domain › AN1-like Zinc finger 0.62 41.0 3.56e-01 70.0% 41.2%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 45.0 2.79e-01 80.0% 41.1%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.61 42.0 3.39e-01 72.0% 84.8%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.61 50.0 4.92e-01 92.0% 88.9%
2dloA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.59 47.0 4.05e-01 90.0% 64.2%
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.58 48.0 3.35e-01 98.0% 73.9%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.57 44.0 4.38e-01 86.0% 92.2%
3klkA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.57 43.0 3.12e-01 88.0% 36.0%
4qiwB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.56 47.0 3.36e-01 98.0% 66.9%
3n2oC01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.56 44.0 3.00e-01 90.0% 90.4%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 45.0 3.74e-01 100.0% 82.5%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 41.0 2.99e-01 94.0% 27.7%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.54 35.0 3.46e-01 78.0% 58.9%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.54 36.0 3.39e-01 70.0% 91.9%
1zj8A02 3.90.480.10 Alpha Beta › Alpha-Beta Complex › Sulfite Reductase Hemoprotein; domain 2 › Sulfite Reductase Hemoprotein;Domain 2 0.53 45.0 3.26e-01 100.0% 90.1%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.07e-01 84.0% 56.3%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.60e-01 72.0% 98.0%
2wyhB06 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 39.0 2.57e-01 90.0% 92.6%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.57e-01 72.0% 97.9%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 33.0 3.52e-01 82.0% 89.2%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3634446 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.85 54.0 5.70e-01 76.0% 73.3%
3928956 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.85 54.0 5.28e-01 76.0% 60.0%
3790633 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.84 54.0 5.05e-01 92.0% 55.0%
3255227 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.84 57.0 4.51e-01 70.0% 36.8%
3457996 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.84 57.0 4.23e-01 70.0% 30.4%
3692487 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.84 56.0 4.41e-01 70.0% 35.0%
3797192 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.82 51.0 5.00e-01 80.0% 58.2%
3250498 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.81 54.0 4.23e-01 80.0% 35.0%
3326051 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.81 54.0 4.32e-01 80.0% 36.8%
3718357 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.80 55.0 5.75e-01 74.0% 80.0%
3636589 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.80 56.0 4.59e-01 74.0% 44.4%
3881136 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.80 55.0 5.53e-01 74.0% 72.0%
3380766 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.80 56.0 4.38e-01 82.0% 36.0%
3235465 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.80 52.0 5.08e-01 74.0% 61.8%
3683169 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.80 54.0 4.23e-01 80.0% 35.0%
3957054 377.1.1.87 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF4193 0.80 51.0 5.94e-01 76.0% 100.0%
3837562 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.79 54.0 4.21e-01 82.0% 34.3%
3910122 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.79 55.0 4.96e-01 74.0% 52.9%
3608274 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.79 55.0 5.41e-01 74.0% 70.9%
3431026 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.79 58.0 4.66e-01 78.0% 41.1%
3503676 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.79 50.0 5.01e-01 78.0% 64.0%
3766800 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.79 56.0 5.48e-01 76.0% 69.1%
3430765 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.79 56.0 4.37e-01 82.0% 37.0%
3828987 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.79 53.0 4.25e-01 76.0% 36.8%
3592068 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 53.0 5.04e-01 76.0% 62.1%
3876888 376.1.1.102 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26191 0.77 54.0 4.11e-01 74.0% 32.2%
3192866 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.77 54.0 4.70e-01 92.0% 50.0%
5016275 377.1.1.7 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.77 49.0 5.50e-01 70.0% 94.3%
3710994 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.76 49.0 4.00e-01 88.0% 36.7%
3489435 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.76 52.0 4.64e-01 82.0% 51.4%
3903161 377.1.1.20 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Vps39_2 0.75 50.0 5.47e-01 82.0% 87.5%
3859342 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.75 52.0 4.95e-01 74.0% 61.7%
3472238 376.1.5.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger › zf-AN1 0.75 46.0 4.99e-01 80.0% 77.5%
4563368 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 50.0 2.91e-01 82.0% 8.3%
3598301 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.74 46.0 3.84e-01 90.0% 35.6%
3554759 376.1.3.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_CARP1-2 0.74 51.0 4.87e-01 74.0% 61.7%
3715280 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 47.0 4.90e-01 74.0% 73.3%
3609044 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 58.0 5.97e-01 100.0% 91.7%
3791889 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.72 50.0 4.23e-01 92.0% 45.0%
5061253 376.1.3.97 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Prok-RING_2 0.68 51.0 4.49e-01 84.0% 56.2%
4998314 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 50.0 4.70e-01 82.0% 66.7%
3696026 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 47.0 4.43e-01 74.0% 61.7%
5021067 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 4.24e-01 90.0% 95.2%
3900403 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 54.0 5.29e-01 98.0% 89.1%
89489 376.1.5.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger › zf-AN1 0.62 41.0 3.56e-01 70.0% 41.2%
3336588 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 53.0 3.27e-01 100.0% 30.8%
3472433 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.61 52.0 5.23e-01 98.0% 98.0%
3181604 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.60 44.0 3.69e-01 82.0% 43.2%
1499737 109.2.1.26 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_92 0.60 51.0 3.02e-01 98.0% 31.3%
3589621 109.2.1.26 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_92 0.59 51.0 3.00e-01 98.0% 31.5%
3790093 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.59 45.0 2.59e-01 84.0% 17.6%
3827127 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.58 42.0 3.54e-01 80.0% 82.1%
3789788 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.58 45.0 2.65e-01 84.0% 22.4%
3736484 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 51.0 4.11e-01 98.0% 72.6%
4238585 375.1.4.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C 0.57 44.0 4.37e-01 86.0% 100.0%
3281913 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 42.0 3.38e-01 82.0% 89.8%
3475492 3628.1.1.1 ↗ a+b complex topology › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › zf-TFIIIC 0.55 43.0 3.04e-01 100.0% 62.4%
4591362 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.55 42.0 2.96e-01 92.0% 30.5%
3592922 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.53 34.0 4.02e-01 78.0% 94.3%
4185289 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.53 39.0 3.16e-01 84.0% 73.6%
3978182 209.1.1.6 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › InvE_AD 0.52 37.0 2.82e-01 80.0% 46.4%
3277146 5.1.3.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.51 42.0 2.61e-01 96.0% 39.2%
3456752 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 36.0 2.23e-01 80.0% 68.7%