←Back to structures

F-box_domain_containing_protein

Euk-Vir

Pandoravirus_macleodensis

F-box_domain_containing_protein__YP_009481215__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481215 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

73.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-58
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.88 62.0 6.68e-01 73.9% 92.1%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.86 64.0 6.43e-01 84.8% 80.4%
3ogkB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.84 59.0 6.22e-01 73.9% 85.4%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.80 71.0 4.37e-01 100.0% 28.6%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.75 65.0 5.30e-01 100.0% 64.4%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.71 57.0 4.71e-01 93.5% 88.6%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.71 60.0 4.79e-01 100.0% 77.0%
2q74A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 42.0 3.09e-01 76.1% 56.6%
2o8pA00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.58 45.0 3.04e-01 95.7% 43.4%
1z7lA00 1.10.10.2660 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ubiquitin-activating enzyme E1, SCCH domain 0.57 44.0 2.93e-01 100.0% 69.0%
3gedA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 47.0 3.03e-01 100.0% 48.3%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.52 36.0 2.68e-01 76.1% 38.6%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.51 42.0 3.40e-01 100.0% 92.0%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.95 72.0 4.02e-01 80.4% 7.5%
3349711 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 68.0 6.92e-01 76.1% 77.8%
3341479 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 73.0 6.23e-01 84.8% 55.7%
3360537 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.92 70.0 7.42e-01 80.4% 97.5%
3461050 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 69.0 6.71e-01 80.4% 74.0%
3380603 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.91 67.0 6.78e-01 80.4% 80.0%
3628631 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 68.0 6.12e-01 84.8% 61.7%
3731257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 63.0 6.65e-01 76.1% 87.5%
3239444 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 60.0 6.33e-01 71.7% 82.5%
3396134 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 62.0 6.85e-01 76.1% 100.0%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 73.0 6.45e-01 91.3% 64.6%
3217628 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 62.0 6.49e-01 76.1% 87.5%
3221696 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.86 77.0 4.43e-01 97.8% 15.7%
3238357 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 59.0 6.49e-01 71.7% 94.3%
3665552 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.86 75.0 4.23e-01 95.7% 12.3%
3389442 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 67.0 6.82e-01 87.0% 86.7%
3437176 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 72.0 6.56e-01 91.3% 70.0%
3245275 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 63.0 6.62e-01 80.4% 90.0%
3456290 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 76.0 6.53e-01 97.8% 81.4%
3470430 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 64.0 6.76e-01 80.4% 92.5%
None — 0.85 74.0 4.06e-01 95.7% 13.4%
3303934 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 64.0 6.47e-01 80.4% 82.2%
3529395 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 67.0 5.94e-01 87.0% 66.2%
4011424 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 76.0 6.02e-01 100.0% 90.0%
3214169 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 62.0 6.33e-01 80.4% 82.2%
3524044 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 63.0 6.36e-01 82.6% 82.2%
3680688 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.84 77.0 4.37e-01 100.0% 13.2%
3711287 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 71.0 5.37e-01 93.5% 56.7%
3646855 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 65.0 6.58e-01 84.8% 86.7%
3688419 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 59.0 6.18e-01 80.4% 87.5%
3671627 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.83 71.0 4.44e-01 95.7% 25.1%
3214753 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 56.0 6.17e-01 71.7% 94.3%
3672250 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.82 72.0 4.67e-01 97.8% 34.7%
3239855 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 62.0 6.31e-01 91.3% 84.4%
3823768 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 61.0 5.72e-01 82.6% 67.3%
3484993 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 70.0 4.04e-01 95.7% 15.4%
3819291 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 61.0 5.73e-01 80.4% 69.1%
3208443 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 68.0 5.15e-01 93.5% 77.1%
3920713 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.81 67.0 3.85e-01 91.3% 16.5%
3227162 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 57.0 6.08e-01 76.1% 90.0%
3230376 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.80 70.0 3.94e-01 95.7% 13.7%
3691218 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 63.0 6.01e-01 87.0% 81.8%
3320386 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 67.0 5.36e-01 93.5% 77.8%
3236616 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.80 67.0 4.12e-01 95.7% 35.6%
3642624 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.80 71.0 4.51e-01 97.8% 26.7%
3639601 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.79 63.0 3.51e-01 89.1% 14.5%
3568879 207.1.1.134 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.79 69.0 3.98e-01 97.8% 16.9%
4028410 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 60.0 5.69e-01 82.6% 89.1%
3399647 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 69.0 6.54e-01 100.0% 85.5%
3485475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 66.0 5.40e-01 95.7% 76.5%
3242739 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 64.0 6.23e-01 91.3% 84.0%
3466008 207.1.1.96 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 0.78 63.0 3.64e-01 93.5% 16.3%
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 70.0 6.04e-01 100.0% 88.6%
3206932 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.77 67.0 3.88e-01 95.7% 14.7%
3377515 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 58.0 5.91e-01 82.6% 88.9%
3239562 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 60.0 5.72e-01 87.0% 83.6%
3184741 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 67.0 5.05e-01 100.0% 90.0%
2899589 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 64.0 5.49e-01 95.7% 85.1%
3303758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.76 66.0 3.60e-01 97.8% 7.2%
None — 0.76 66.0 3.60e-01 97.8% 7.1%
3420574 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 58.0 5.86e-01 84.8% 88.9%
3407033 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 67.0 5.69e-01 100.0% 90.7%
3208423 109.3.1.168 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_5 0.76 63.0 3.55e-01 100.0% 8.4%
3228948 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 55.0 5.79e-01 82.6% 92.5%
3810074 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 67.0 5.59e-01 100.0% 82.3%
3856479 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.75 65.0 3.72e-01 97.8% 15.2%
4011985 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 65.0 5.25e-01 100.0% 85.6%
3575456 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 66.0 5.29e-01 100.0% 86.7%
3400371 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 61.0 4.87e-01 93.5% 82.1%
3237331 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 58.0 5.68e-01 87.0% 80.0%
3194725 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 65.0 5.32e-01 100.0% 87.1%
3696783 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 64.0 3.61e-01 100.0% 24.5%
3311874 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 65.0 5.55e-01 100.0% 94.7%
3317266 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.74 65.0 3.80e-01 97.8% 15.1%
3792735 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 65.0 3.79e-01 100.0% 20.1%
3628163 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 61.0 5.41e-01 91.3% 67.7%
3734528 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 62.0 5.20e-01 97.8% 81.2%
3218165 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 51.0 5.33e-01 80.4% 90.0%
3237435 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 49.0 5.21e-01 73.9% 87.5%
3239033 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 57.0 5.57e-01 91.3% 92.0%
3272640 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.70 61.0 3.74e-01 100.0% 19.3%
3507975 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 59.0 3.61e-01 100.0% 23.5%
3852694 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 59.0 3.75e-01 97.8% 25.8%
3229045 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.69 58.0 4.73e-01 100.0% 66.3%
3233582 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 58.0 3.54e-01 100.0% 32.1%
3741846 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.67 55.0 4.48e-01 100.0% 84.0%
D2 medium residues 112-233
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ebbA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.71 64.0 4.99e-01 100.0% 66.3%
2r17C00 1.25.40.660 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein 35, helical subcomplex Vps35-C 0.68 61.0 4.62e-01 100.0% 61.1%
3wozB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 61.0 4.96e-01 99.2% 71.6%
3bwtA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 61.0 4.47e-01 100.0% 49.5%
5bz1A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 61.0 4.33e-01 100.0% 52.3%
2qk2A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 59.0 4.79e-01 99.2% 68.4%
7cgfA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 58.0 4.21e-01 100.0% 57.2%
3zpjA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 57.0 4.15e-01 100.0% 49.4%
4ffbC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 57.0 4.66e-01 99.2% 68.8%
8gpsA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.64 49.0 5.21e-01 81.1% 95.2%
3k49A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 58.0 4.14e-01 100.0% 50.4%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 50.0 4.81e-01 84.4% 94.9%
4u2xF00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 55.0 4.94e-01 100.0% 94.9%
1elrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 48.0 4.80e-01 85.2% 91.4%
8gpvA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.61 51.0 5.09e-01 93.4% 90.7%
2pmvA01 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.60 53.0 4.19e-01 100.0% 61.0%
2wfpA03 1.10.441.10 Mainly Alpha › Orthogonal Bundle › Phosphomannose Isomerase; domain 2 › Phosphomannose Isomerase, domain 2 0.59 33.0 3.42e-01 73.8% 55.8%
5ctrA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 52.0 3.97e-01 100.0% 54.4%
3ez0C00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 41.0 3.43e-01 72.1% 91.8%
2xevB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 45.0 4.54e-01 86.1% 96.0%
2yvyA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.56 49.0 4.95e-01 100.0% 100.0%
3ibhA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 41.0 4.24e-01 77.0% 89.8%
4lctB00 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 48.0 3.58e-01 100.0% 43.4%
1hzfA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 48.0 3.70e-01 100.0% 65.2%
1xd4A04 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.54 44.0 3.61e-01 86.9% 62.8%
1lrvA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 48.0 3.91e-01 100.0% 62.2%
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.53 39.0 3.80e-01 97.5% 70.5%
1xnfA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 46.0 3.71e-01 100.0% 52.9%
3ppuB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 39.0 4.11e-01 78.7% 92.0%
4abnA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 45.0 3.52e-01 98.4% 49.8%
3efzB00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.51 44.0 3.70e-01 97.5% 73.3%
1txdA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.50 37.0 2.98e-01 77.0% 56.7%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3272965 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.78 64.0 6.88e-01 92.6% 100.0%
3874523 109.4.1.1400 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27614, PF30377 0.73 66.0 4.33e-01 100.0% 38.8%
4042478 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.72 63.0 4.09e-01 100.0% 21.9%
3259553 109.3.1.20 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_4 0.72 67.0 4.89e-01 100.0% 57.4%
3967836 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.71 65.0 5.65e-01 100.0% 68.1%
3722207 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.70 65.0 4.88e-01 100.0% 50.5%
3702456 109.4.1.44 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35 0.70 62.0 4.12e-01 100.0% 43.5%
3736327 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 62.0 4.06e-01 100.0% 40.6%
3583518 109.4.1.1400 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27614, PF30377 0.67 59.0 4.04e-01 99.2% 34.9%
3643821 109.4.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.66 59.0 4.20e-01 100.0% 41.6%
3737232 109.4.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.66 59.0 4.12e-01 100.0% 85.4%
3675671 109.4.1.1265 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF, PUF_NOP9 0.66 58.0 4.01e-01 100.0% 51.7%
3705328 109.4.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.65 56.0 4.13e-01 96.7% 42.1%
3581594 109.4.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.65 53.0 4.88e-01 89.3% 80.6%
3637954 109.4.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.64 57.0 4.12e-01 100.0% 40.0%
3410591 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 52.0 4.45e-01 88.5% 83.4%
None — 0.64 57.0 4.08e-01 100.0% 45.6%
3244085 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.64 51.0 4.71e-01 86.1% 70.6%
3702757 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 57.0 4.35e-01 100.0% 76.6%
3639276 109.4.1.1265 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF, PUF_NOP9 0.64 57.0 3.97e-01 100.0% 37.8%
5017864 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 57.0 3.42e-01 100.0% 58.6%
4012147 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 56.0 4.08e-01 100.0% 46.4%
None — 0.63 56.0 3.93e-01 100.0% 44.8%
3368054 109.4.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.63 56.0 3.92e-01 100.0% 40.2%
3740818 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.63 51.0 4.89e-01 88.5% 80.7%
3505566 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 50.0 3.84e-01 91.0% 38.1%
3406487 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.62 50.0 4.63e-01 86.1% 71.0%
3938124 109.4.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.62 55.0 3.85e-01 100.0% 38.4%
3720157 109.4.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.61 55.0 3.76e-01 100.0% 41.7%
3681580 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.61 54.0 4.94e-01 98.4% 93.3%
3607741 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 54.0 4.45e-01 100.0% 79.1%
3788055 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.61 48.0 4.20e-01 85.2% 62.6%
5050223 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 53.0 4.27e-01 99.2% 74.5%
3622527 109.4.1.1466 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_N 0.58 50.0 3.97e-01 96.7% 54.3%
3167985 109.4.1.890 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C 0.58 46.0 4.47e-01 87.7% 92.1%
326759 109.13.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › MgtE N-terminal domain-like › MgtE N-terminal domain-like › MgtE_N 0.56 49.0 4.93e-01 100.0% 98.4%
3574949 109.4.1.2010 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C 0.56 49.0 3.30e-01 100.0% 28.4%
3698254 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 48.0 4.34e-01 100.0% 95.9%
3821366 109.4.1.198 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.54 47.0 3.99e-01 100.0% 72.6%
3290337 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 41.0 4.19e-01 97.5% 89.6%
3370882 109.4.1.1683 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, PF30484 0.52 43.0 3.14e-01 90.2% 32.5%
D3 medium residues 234-249_269-340
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_552__YP_008437467__Pandoravirus_salinus__1349410__D281-356
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nwlC00 1.10.3860.10 Mainly Alpha › Orthogonal Bundle › Proton glutamate symport protein › Sodium:dicarboxylate symporter 0.56 48.0 3.20e-01 100.0% 84.6%
2k5eA00 1.10.3910.10 Mainly Alpha › Orthogonal Bundle › SP0561-like › SP0561-like 0.56 35.0 3.74e-01 96.6% 74.0%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.56 33.0 3.45e-01 98.9% 64.6%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 39.0 4.26e-01 100.0% 94.3%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.55 32.0 3.39e-01 100.0% 63.6%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.55 31.0 3.57e-01 98.9% 78.7%
3d6jA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 37.0 4.07e-01 100.0% 94.0%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.54 31.0 3.08e-01 79.5% 53.8%
2fj6A01 1.10.150.260 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like 0.52 39.0 4.25e-01 97.7% 100.0%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 37.0 2.48e-01 79.5% 85.0%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.51 33.0 3.72e-01 90.9% 96.8%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927671 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.57 31.0 2.35e-01 98.9% 20.4%
4861524 540.1.1.1 ↗ few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX6B 0.57 28.0 2.95e-01 95.5% 50.6%
4086147 3567.1.1.107 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › UPF0154 0.54 32.0 3.83e-01 100.0% 92.7%
4170287 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.54 40.0 3.10e-01 95.5% 32.6%
4833005 101.1.17.1 ↗ alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e 0.52 34.0 3.68e-01 81.8% 83.1%
3467989 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 32.0 3.71e-01 80.7% 93.3%