←Back to structures
F-box_domain_containing_protein
Euk-VirPandoravirus_macleodensis
F-box_domain_containing_protein__YP_009481241__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481241 ↗
- Protein ID:
- F-box_domain_containing_protein
- Kingdom:
- euk
Quality
80.7
mean pLDDT
Cluster
View cluster (14 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 93-123_143-208
Domain cluster:
rep: Ankyrin_repeat_domain_containing_protein__YP_009483170__Pandoravirus_quercus__2107709__D98-130_143-184
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n11A00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.78 | 72.0 | 4.64e-01 | 100.0% | 26.2% |
| 1xd4A04 | 1.10.840.10 | Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain | 0.62 | 49.0 | 3.85e-01 | 86.6% | 65.1% |
| 2katA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 47.0 | 4.50e-01 | 82.5% | 77.4% |
| 2b1eA02 | 1.20.1310.30 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › | 0.59 | 45.0 | 3.97e-01 | 84.5% | 100.0% |
| 4bwrA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 47.0 | 3.05e-01 | 88.7% | 20.3% |
| 2vq2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 48.0 | 3.79e-01 | 100.0% | 50.5% |
| 1cm5A00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.55 | 48.0 | 2.89e-01 | 100.0% | 81.8% |
| 4cczA01 | 3.20.20.330 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain | 0.54 | 47.0 | 3.38e-01 | 100.0% | 65.0% |
| 4irlB02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.53 | 32.0 | 3.34e-01 | 86.6% | 62.4% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3896986 | 109.3.1.6 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › TRP_2 | 0.79 | 74.0 | 5.12e-01 | 100.0% | 51.9% |
| 4017062 | 109.3.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank | 0.79 | 73.0 | 5.14e-01 | 100.0% | 46.1% |
| 3399843 | 109.3.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 | 0.77 | 69.0 | 5.19e-01 | 95.9% | 55.9% |
| 3260674 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.76 | 60.0 | 3.88e-01 | 83.5% | 25.2% |
| 3725739 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.75 | 68.0 | 5.18e-01 | 100.0% | 52.0% |
| 3288019 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.75 | 69.0 | 4.37e-01 | 100.0% | 35.9% |
| 3186792 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.74 | 68.0 | 5.92e-01 | 100.0% | 71.7% |
| 3611655 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 64.0 | 4.92e-01 | 97.9% | 46.8% |
| 3640926 | 109.4.1.1274 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long | 0.68 | 60.0 | 4.06e-01 | 100.0% | 53.3% |
| 3463192 | 109.4.1.1261 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long | 0.66 | 58.0 | 5.79e-01 | 97.9% | 100.0% |
| 3433445 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.66 | 58.0 | 5.02e-01 | 100.0% | 74.8% |
| 3827580 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.65 | 58.0 | 5.46e-01 | 100.0% | 90.8% |
| 3614923 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 55.0 | 4.16e-01 | 93.8% | 44.2% |
| 3826259 | 109.4.1.1293 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 | 0.65 | 57.0 | 5.19e-01 | 100.0% | 77.0% |
| 3435822 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.65 | 57.0 | 4.77e-01 | 100.0% | 70.3% |
| 3347053 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.63 | 55.0 | 4.36e-01 | 100.0% | 49.8% |
| 3346466 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.63 | 54.0 | 4.25e-01 | 99.0% | 49.3% |
| 3350773 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.63 | 54.0 | 4.56e-01 | 100.0% | 58.3% |
| 3669084 | 109.4.1.1271 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 | 0.61 | 52.0 | 4.69e-01 | 95.9% | 97.0% |
| 3597454 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 44.0 | 4.00e-01 | 76.3% | 93.1% |
| 3649300 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.60 | 53.0 | 5.14e-01 | 99.0% | 91.8% |
| 3301196 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.60 | 52.0 | 4.72e-01 | 97.9% | 94.1% |
| 1086916 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.59 | 49.0 | 4.39e-01 | 93.8% | 73.4% |
D2
medium
residues 209-343