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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_macleodensis

F-box_domain_containing_protein__YP_009481284__Pandoravirus_macleodensis__2107707

Identity

Accession:: YP_009481284 ↗
Protein ID:: F-box_domain_containing_protein
Kingdom:: euk

Quality

65.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-66

PDB

Domain cluster: rep: F-box_domain_containing_protein__YP_009482610__Pandoravirus_neocaledonia__2107708__D12-61

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12937.13 best	F-box-like	24.3	2.90e-05	89.6%	89.4%

D2 medium residues 102-184

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1jmwA00	1.20.120.30	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain	0.54	41.0	3.58e-01	85.5%	88.4%
3layF00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.50	36.0	3.77e-01	95.2%	82.1%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3643409	5001.1.1.80 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Dicty_CAR	0.54	39.0	2.76e-01	79.5%	77.4%
3208504	109.4.1.101 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CENP-I	0.52	43.0	2.60e-01	98.8%	23.3%

D3 medium residues 185-222_241-299

PDB

D4 medium residues 300-359

PDB

D5 medium residues 373-426

PDB

Domain cluster: rep: F-box_domain_containing_protein__YP_009483294__Pandoravirus_quercus__2107709__D328-389

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1mufA01	2.20.110.10	Mainly Beta › Single Sheet › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	0.69	61.0	4.80e-01	100.0%	49.6%
4iglB00	2.180.10.10	Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core	0.63	51.0	2.88e-01	96.3%	8.6%
3mswA00	2.40.128.720	Mainly Beta › Beta Barrel › Lipocalin ›	0.62	54.0	4.00e-01	96.3%	50.4%
4r03A00	2.40.128.720	Mainly Beta › Beta Barrel › Lipocalin ›	0.61	50.0	4.09e-01	96.3%	58.7%
4r8oA00	2.40.128.720	Mainly Beta › Beta Barrel › Lipocalin ›	0.58	48.0	4.07e-01	96.3%	61.2%
5nz7A01	2.70.98.40	Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain	0.57	45.0	2.92e-01	98.1%	64.6%
1iwmA00	2.50.20.10	Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX	0.57	44.0	3.11e-01	96.3%	26.0%
4ghbA00	2.40.160.190	Mainly Beta › Beta Barrel › Porin ›	0.56	45.0	3.05e-01	100.0%	48.2%
2xvlA01	2.60.40.1760	Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31)	0.54	47.0	3.15e-01	100.0%	73.5%
1wczA01	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.52	42.0	3.36e-01	92.6%	76.5%
1tfkA00	3.10.450.200	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.51	38.0	3.24e-01	81.5%	47.9%
3e9mB02	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.51	42.0	2.98e-01	98.1%	63.1%
2f2hA04	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.51	42.0	3.49e-01	100.0%	92.7%
1nqfA02	2.40.170.20	Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain	0.51	40.0	2.50e-01	100.0%	16.4%
3bgtA01	2.40.400.10	Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like	0.50	39.0	2.77e-01	100.0%	45.5%
1agjA01	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.50	43.0	3.31e-01	100.0%	84.3%

ECOD (24)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3965839	77.1.1.6 ↗	beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2	0.71	63.0	4.54e-01	100.0%	34.8%
3287702	77.1.1.0 ↗	beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein	0.67	59.0	4.63e-01	100.0%	48.7%
1099835	77.1.1.1 ↗	beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1	0.67	61.0	4.84e-01	100.0%	50.9%
3386526	77.1.1.6 ↗	beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2	0.67	60.0	4.22e-01	100.0%	40.6%
3984133	3735.1.1.12 ↗	beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell	0.66	51.0	2.76e-01	98.1%	4.3%
3236808	77.1.1.0 ↗	beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein	0.66	59.0	5.18e-01	100.0%	75.0%
3915512	3735.1.1.14 ↗	beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell	0.65	56.0	3.07e-01	100.0%	5.6%
2631766	3894.1.1.1 ↗	beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1	0.65	57.0	4.33e-01	98.1%	42.1%
2722572	3894.1.1.3 ↗	beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M	0.64	55.0	4.13e-01	96.3%	41.5%
3263745	844.1.1.0 ↗	beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain	0.58	51.0	3.60e-01	96.3%	43.9%
4067273	71.1.1.3 ↗	beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB	0.58	50.0	3.55e-01	98.1%	37.0%
5042979	241.1.1.30 ↗	a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF26556	0.57	47.0	3.51e-01	96.3%	58.0%
3653236	3347.1.1.0 ↗	beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112	0.56	47.0	3.42e-01	94.4%	43.0%
5072214	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.56	43.0	3.46e-01	85.2%	86.4%
4225745	304.107.1.3 ↗	a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › TrmE_N	0.55	38.0	3.03e-01	72.2%	40.0%
5047489	844.1.1.0 ↗	beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain	0.55	46.0	3.18e-01	98.1%	35.1%
3247905	12.3.1.46 ↗	beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD	0.55	44.0	3.08e-01	98.1%	88.4%
None	—		0.55	44.0	3.02e-01	100.0%	62.3%
5046573	844.1.1.2 ↗	beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR	0.54	41.0	3.05e-01	98.1%	29.4%
3221377	9.11.1.0 ↗	beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like	0.53	40.0	3.21e-01	94.4%	39.1%
3349878	844.1.1.2 ↗	beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR	0.53	44.0	3.08e-01	94.4%	31.0%
4645764	71.1.1.3 ↗	beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB	0.52	44.0	3.20e-01	100.0%	35.3%
3587407	331.1.1.0 ↗	a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like	0.52	43.0	3.55e-01	100.0%	51.0%
3221919	246.3.1.0 ↗	a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like	0.51	44.0	2.63e-01	98.1%	38.2%

D6 medium residues 427-561

PDB