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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_macleodensis

F-box_domain_containing_protein__YP_009481323__Pandoravirus_macleodensis__2107707

Identity

Accession:: YP_009481323 ↗
Protein ID:: F-box_domain_containing_protein
Kingdom:: euk

Quality

75.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-52

PDB

Domain cluster: rep: F-box_domain_containing_protein__YP_009482610__Pandoravirus_neocaledonia__2107708__D12-61

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12937.13 best	F-box-like	44.4	1.60e-11	89.4%	85.1%
PF00646.39	F-box	22.9	8.50e-05	80.8%	86.1%

D2 high residues 235-350

PDB

Domain cluster: rep: F-box_domain_containing_protein__YP_009483259__Pandoravirus_quercus__2107709__D363-500

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5zwnQ01	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.55	32.0	3.74e-01	79.3%	82.5%
3uwtA02	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.53	33.0	3.64e-01	78.4%	80.7%
2giaA00	2.30.31.40	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A ›	0.52	38.0	3.45e-01	75.0%	77.3%
4d10F01	3.40.140.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2	0.52	36.0	3.19e-01	73.3%	84.4%
7wezA01	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.51	31.0	3.69e-01	77.6%	92.0%
2mzsA00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.50	31.0	3.32e-01	79.3%	70.7%
1vw4I00	2.40.150.20	Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23	0.50	40.0	3.95e-01	87.9%	96.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5029199	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.53	35.0	4.08e-01	75.0%	97.5%
5000386	216.1.1.0 ↗	a+b two layers › UBC-like › UBC-like › UBC-like	0.52	43.0	4.08e-01	92.2%	89.0%
1715789	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.50	31.0	3.32e-01	79.3%	70.7%

D3 medium residues 72-227

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2af5A02	3.90.930.1	Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 ›	0.62	46.0	4.91e-01	76.3%	85.5%
4iglB00	2.180.10.10	Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core	0.53	48.0	3.12e-01	98.1%	58.1%
1z4vA00	2.120.10.10	Mainly Beta › 6 Propeller › Neuraminidase ›	0.51	44.0	3.22e-01	93.6%	85.6%
1ei5A02	2.40.128.50	Mainly Beta › Beta Barrel › Lipocalin ›	0.51	25.0	3.35e-01	96.2%	87.8%
4uf7B00	2.120.10.10	Mainly Beta › 6 Propeller › Neuraminidase ›	0.51	45.0	3.42e-01	100.0%	89.6%
3b77A01	2.30.29.50	Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain	0.51	26.0	3.19e-01	98.7%	77.0%
1ospO01	2.40.128.160	Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like)	0.50	33.0	3.97e-01	98.1%	99.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4957570	79.1.1.0 ↗	beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain	0.81	38.0	4.06e-01	89.1%	51.9%
3273142	77.1.1.0 ↗	beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein	0.78	45.0	3.50e-01	71.2%	29.4%
4946049	79.1.1.0 ↗	beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain	0.74	32.0	4.43e-01	83.3%	80.0%
3593136	77.2.1.0 ↗	beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N	0.64	47.0	4.50e-01	75.0%	86.9%
3268625	77.2.1.1 ↗	beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN	0.62	46.0	4.01e-01	75.6%	56.8%
3617898	79.1.1.0 ↗	beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain	0.62	51.0	5.31e-01	100.0%	91.7%
3459971	5084.5.3.9 ↗	beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › PF28611	0.61	45.0	3.50e-01	74.4%	39.7%
3972292	9.11.1.0 ↗	beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like	0.53	24.0	3.25e-01	96.2%	80.7%
356532	77.1.1.1 ↗	beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1	0.52	39.0	3.45e-01	76.3%	82.1%
3783013	5.1.5.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed	0.52	43.0	3.45e-01	90.4%	84.7%
3786957	4291.1.1.1 ↗	beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP	0.50	44.0	3.17e-01	94.2%	52.1%
2527935	5.1.3.5 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN	0.50	45.0	3.33e-01	100.0%	87.7%