F-box_domain_containing_protein

Euk-Vir

Pandoravirus_neocaledonia

F-box_domain_containing_protein__YP_009481624__Pandoravirus_neocaledonia__2107708

Identity

61.7 mean pLDDT

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

View cluster (4 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 75-138

PDB

Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_008318724__Pandoravirus_dulcis__1349409__D16-76

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12937.13 best	F-box-like	25.4	1.40e-05	68.8%	70.2%

D2 medium residues 221-241_259-340

PDB

D3 medium residues 341-436

PDB

D4 medium residues 545-690

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3onkA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.62	45.0	4.69e-01	76.7%	90.5%
1hu3A00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.58	51.0	4.60e-01	100.0%	69.6%
2imsA00	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.55	36.0	3.52e-01	93.2%	58.9%
2qk1A01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.55	47.0	4.09e-01	96.6%	76.2%
4wz9A04	1.25.50.20	Mainly Alpha › Alpha Horseshoe › Zincin-like fold ›	0.54	47.0	3.67e-01	96.6%	54.6%
2ygwA01	1.20.140.90	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain	0.52	37.0	3.72e-01	73.3%	92.2%
3vhlA02	1.20.58.740	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C	0.52	39.0	4.26e-01	77.4%	98.3%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4934160	3352.1.1.1 ↗	alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3	0.62	47.0	3.38e-01	80.1%	44.8%
4029367	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.61	54.0	3.60e-01	100.0%	23.4%
3347012	109.4.1.2050 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, CLASP_N, HEAT_EZ, XMAP215_CLASP_TOG	0.61	50.0	3.30e-01	89.0%	42.4%
3169215	109.4.1.1471 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IPO5	0.60	53.0	4.61e-01	100.0%	64.7%
3391548	109.4.1.901 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_GCN1	0.58	49.0	4.77e-01	98.6%	83.7%
3715151	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	47.0	4.27e-01	94.5%	81.0%
3682606	206.1.1.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase	0.51	46.0	3.01e-01	100.0%	33.2%

D5 medium residues 691-816

PDB