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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_neocaledonia

F-box_domain_containing_protein__YP_009481733__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009481733 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

58.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 98-285
PDB
D2 medium residues 22-74
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 32.1 1.10e-07 90.6% 93.6%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.89 73.0 6.08e-01 94.3% 54.0%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.77 68.0 4.20e-01 94.3% 27.8%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.77 65.0 5.58e-01 98.1% 59.1%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.65 53.0 4.80e-01 98.1% 92.4%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.47e-01 98.1% 79.2%
6cxtB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.64 54.0 4.36e-01 100.0% 64.3%
3ns4A00 1.10.357.110 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus 0.63 54.0 3.69e-01 100.0% 81.5%
3fhnA05 1.10.10.2270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Dsl1p vesicle tethering complex, Tip20p subunit, domain E 0.62 53.0 4.96e-01 98.1% 97.0%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.60 41.0 3.61e-01 73.6% 45.9%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 39.0 3.64e-01 71.7% 80.8%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.58 46.0 4.30e-01 90.6% 72.9%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 44.0 3.31e-01 84.9% 51.7%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 46.0 3.86e-01 98.1% 87.3%
2dsjA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.56 44.0 4.24e-01 96.2% 83.6%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 37.0 3.25e-01 73.6% 43.5%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.54 44.0 3.64e-01 98.1% 63.0%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.53 36.0 3.46e-01 73.6% 75.0%
1rv2D04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.53 36.0 3.39e-01 73.6% 55.7%
3am6A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 41.0 2.87e-01 96.2% 73.2%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3276040 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.97 83.0 7.43e-01 98.1% 68.6%
3403835 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.95 84.0 6.99e-01 98.1% 58.8%
3886321 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 82.0 6.98e-01 98.1% 61.3%
3916304 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.94 83.0 6.80e-01 98.1% 55.6%
3711287 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.94 82.0 6.35e-01 98.1% 47.1%
3845951 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 80.0 6.64e-01 96.2% 56.5%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 83.0 6.90e-01 100.0% 58.8%
3652521 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 81.0 7.17e-01 100.0% 68.5%
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 80.0 7.20e-01 98.1% 70.0%
3194125 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 80.0 6.83e-01 100.0% 61.3%
4023099 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 80.0 6.01e-01 100.0% 42.6%
3903969 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 81.0 6.63e-01 100.0% 55.6%
3828000 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 70.0 7.58e-01 81.1% 95.6%
3261282 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 83.0 8.23e-01 100.0% 92.7%
3248494 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 81.0 7.49e-01 100.0% 76.9%
3901480 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 80.0 6.84e-01 100.0% 62.5%
3806475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 81.0 7.12e-01 100.0% 68.0%
3171955 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.91 84.0 6.75e-01 100.0% 73.7%
3643181 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 77.0 6.80e-01 100.0% 65.3%
3617852 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 79.0 7.09e-01 100.0% 71.4%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 81.0 6.37e-01 100.0% 51.0%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 82.0 7.00e-01 100.0% 65.0%
3730967 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 82.0 6.33e-01 100.0% 49.5%
3204462 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 82.0 6.00e-01 100.0% 41.6%
3698023 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 77.0 5.81e-01 100.0% 42.6%
3810074 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 81.0 6.95e-01 100.0% 65.8%
3428197 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 75.0 6.45e-01 98.1% 60.0%
3320433 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 74.0 7.12e-01 96.2% 80.0%
3446581 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 82.0 6.80e-01 100.0% 61.2%
3422636 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.88 70.0 7.49e-01 88.7% 100.0%
3250247 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 72.0 6.88e-01 94.3% 78.3%
3644704 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 77.0 6.52e-01 100.0% 60.0%
3721004 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.88 65.0 5.29e-01 81.1% 45.6%
3651806 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.88 75.0 6.43e-01 98.1% 61.3%
4022899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 80.0 6.29e-01 100.0% 52.0%
3305681 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.88 72.0 7.41e-01 92.5% 94.0%
3429995 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 73.0 6.52e-01 98.1% 67.1%
3312720 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 73.0 6.47e-01 100.0% 65.3%
3643788 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 70.0 6.93e-01 86.8% 83.6%
3823956 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.86 79.0 5.52e-01 100.0% 65.8%
3420610 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 71.0 7.09e-01 96.2% 87.3%
3658277 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 73.0 7.03e-01 92.5% 85.0%
3448854 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 66.0 6.78e-01 88.7% 88.0%
3301883 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 73.0 6.34e-01 100.0% 62.5%
3827406 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 75.0 6.33e-01 96.2% 64.7%
3706611 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 76.0 6.93e-01 100.0% 84.3%
3256545 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 71.0 6.66e-01 100.0% 76.9%
3781279 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 71.0 6.17e-01 100.0% 62.5%
3617289 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 74.0 7.10e-01 98.1% 85.0%
3461596 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 65.0 5.93e-01 92.5% 64.3%
3443890 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 65.0 6.91e-01 90.6% 100.0%
3209791 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 74.0 6.89e-01 100.0% 80.0%
3730054 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 74.0 6.66e-01 100.0% 74.3%
3715255 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 67.0 6.69e-01 96.2% 87.3%
3250931 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 72.0 6.40e-01 100.0% 69.3%
3186415 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 70.0 5.92e-01 100.0% 58.8%
3691218 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 65.0 6.45e-01 98.1% 85.5%
3810025 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 66.0 6.01e-01 98.1% 68.6%
3660462 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 62.0 6.59e-01 90.6% 100.0%
3245054 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 68.0 6.80e-01 98.1% 90.9%
3806680 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 64.0 6.61e-01 92.5% 96.0%
3826054 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 66.0 6.59e-01 94.3% 90.9%
3818741 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 64.0 6.19e-01 98.1% 80.0%
3419846 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 68.0 5.43e-01 96.2% 90.5%
3817490 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.79 70.0 5.60e-01 100.0% 98.1%
3650513 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 64.0 6.40e-01 90.6% 87.3%
3466887 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 62.0 6.39e-01 94.3% 94.0%
3345485 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 67.0 6.27e-01 94.3% 78.1%
4021336 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 69.0 6.61e-01 100.0% 86.7%
3822418 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.77 70.0 4.45e-01 100.0% 55.1%
3804777 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 63.0 6.27e-01 92.5% 90.9%
3810743 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.77 63.0 4.10e-01 98.1% 20.4%
3446267 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 64.0 6.42e-01 96.2% 100.0%
3802856 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 63.0 6.26e-01 96.2% 90.9%
3176338 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 63.0 5.61e-01 100.0% 63.7%
3738910 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 66.0 5.64e-01 100.0% 61.2%
3641929 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 61.0 6.24e-01 90.6% 100.0%
3298098 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 58.0 6.12e-01 90.6% 100.0%
3451260 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 64.0 6.23e-01 98.1% 86.7%
3917759 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 65.0 5.32e-01 100.0% 63.0%
3660193 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 58.0 5.93e-01 86.8% 96.0%
3443633 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 59.0 5.77e-01 92.5% 81.7%
3729172 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 62.0 4.99e-01 100.0% 49.1%
3831780 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.72 61.0 4.99e-01 96.2% 98.0%
3428949 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.69 54.0 5.44e-01 94.3% 87.3%
3821483 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.66 46.0 4.85e-01 83.0% 100.0%
3829887 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 51.0 5.11e-01 94.3% 92.7%
3819291 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.64 49.0 4.88e-01 92.5% 87.3%
3456664 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.62 48.0 4.79e-01 92.5% 96.4%
3282601 150.8.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.61 41.0 2.87e-01 71.7% 62.1%
3793332 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.53 39.0 3.05e-01 83.0% 93.3%
4884076 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 36.0 2.92e-01 73.6% 34.2%