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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_neocaledonia

F-box_domain_containing_protein__YP_009482098__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482098 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

70.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 33.3 4.70e-08 65.7% 85.1%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 68.0 6.31e-01 100.0% 69.0%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.73 64.0 5.75e-01 100.0% 86.9%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.72 64.0 5.93e-01 100.0% 95.5%
2e31A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.69 52.0 5.48e-01 94.3% 93.5%
3tqgB01 1.10.580.10 Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 0.65 51.0 3.55e-01 87.1% 69.0%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.60 54.0 3.64e-01 100.0% 29.7%
1ug3A02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 47.0 3.92e-01 90.0% 89.8%
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 41.0 3.30e-01 75.7% 63.1%
1ad6A00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 40.0 3.01e-01 72.9% 62.2%
3cjdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 46.0 3.62e-01 100.0% 90.7%
1nlxA00 1.20.120.320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen 0.54 38.0 3.41e-01 74.3% 70.2%
4k35A03 1.10.287.1170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › glycoside hydrolase family 81 endo-[beta] glucanase 0.54 37.0 3.80e-01 74.3% 100.0%
1l3pA00 1.20.120.320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen 0.52 37.0 3.32e-01 72.9% 68.6%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3248494 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 71.0 7.38e-01 97.1% 90.8%
3827406 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.88 79.0 7.33e-01 95.7% 85.9%
3646821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 80.0 7.85e-01 100.0% 94.7%
3301272 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 80.0 6.75e-01 100.0% 64.5%
3578612 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 79.0 6.78e-01 100.0% 73.3%
3617852 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 77.0 7.75e-01 98.6% 97.1%
3363533 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 79.0 7.73e-01 100.0% 100.0%
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 72.0 7.30e-01 100.0% 91.4%
3442747 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 77.0 6.82e-01 95.7% 87.4%
3335288 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 75.0 6.20e-01 100.0% 57.4%
3559990 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 77.0 7.32e-01 98.6% 90.0%
3429995 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 73.0 7.21e-01 100.0% 89.0%
3999567 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 77.0 7.03e-01 100.0% 81.1%
3812206 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 75.0 7.38e-01 97.1% 97.3%
3845951 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 74.0 6.86e-01 94.3% 78.8%
3654886 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 76.0 7.40e-01 100.0% 90.7%
3308939 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 77.0 7.51e-01 98.6% 97.3%
3898084 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 76.0 6.24e-01 98.6% 60.0%
3355899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 76.0 7.08e-01 98.6% 95.3%
3644704 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 78.0 7.24e-01 100.0% 91.8%
3806475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 74.0 7.24e-01 98.6% 89.3%
3643181 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 75.0 7.32e-01 100.0% 90.7%
3901480 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 77.0 7.31e-01 100.0% 88.7%
4019682 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 76.0 6.83e-01 100.0% 87.4%
3403835 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 75.0 7.05e-01 100.0% 92.9%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 74.0 7.11e-01 98.6% 95.0%
3204329 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 76.0 6.53e-01 100.0% 85.7%
3446581 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 76.0 7.05e-01 100.0% 91.8%
3770072 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 76.0 6.90e-01 100.0% 77.8%
3276040 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 65.0 6.52e-01 100.0% 84.3%
3350782 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 75.0 4.75e-01 100.0% 22.7%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 74.0 6.52e-01 98.6% 86.0%
3301883 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 75.0 7.14e-01 100.0% 96.2%
3257387 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 75.0 7.00e-01 100.0% 82.4%
3666811 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 74.0 6.13e-01 100.0% 62.5%
3378208 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 71.0 4.78e-01 95.7% 28.6%
3879992 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 74.0 7.05e-01 98.6% 86.3%
3810074 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 74.0 7.07e-01 100.0% 87.3%
3812115 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 72.0 7.14e-01 97.1% 100.0%
3909942 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 74.0 6.30e-01 100.0% 64.5%
4023603 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 70.0 7.10e-01 97.1% 94.3%
3308764 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 71.0 7.00e-01 98.6% 98.7%
4022899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 74.0 6.47e-01 100.0% 77.0%
4023099 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 73.0 6.13e-01 100.0% 81.7%
3337545 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 67.0 6.93e-01 95.7% 96.9%
3740971 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 72.0 6.74e-01 100.0% 87.1%
3522358 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 73.0 7.11e-01 100.0% 92.0%
3250931 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 70.0 6.89e-01 100.0% 89.3%
3664817 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 74.0 7.03e-01 100.0% 91.3%
3696138 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 73.0 6.56e-01 100.0% 87.4%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 72.0 6.96e-01 100.0% 96.2%
3886321 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 71.0 6.77e-01 97.1% 87.5%
3821430 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 71.0 6.80e-01 100.0% 86.3%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 73.0 6.98e-01 100.0% 88.7%
3916304 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 71.0 6.57e-01 100.0% 83.3%
3652521 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 73.0 7.20e-01 100.0% 98.6%
3803973 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 69.0 6.92e-01 92.9% 94.3%
3194125 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 73.0 6.95e-01 100.0% 92.5%
3453805 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 70.0 6.15e-01 100.0% 69.5%
3536855 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 71.0 6.32e-01 97.1% 89.5%
3903969 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 72.0 6.56e-01 100.0% 78.9%
4545458 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 71.0 6.29e-01 100.0% 87.0%
3902311 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 73.0 6.77e-01 100.0% 97.6%
3472074 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 71.0 6.40e-01 100.0% 76.8%
3730967 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 72.0 6.21e-01 100.0% 73.3%
3664299 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 71.0 6.39e-01 100.0% 86.3%
3699732 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 68.0 6.81e-01 95.7% 98.6%
3644174 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 69.0 6.74e-01 95.7% 96.0%
2899589 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 65.0 6.38e-01 92.9% 85.1%
3595717 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 62.0 6.44e-01 90.0% 92.3%
3706611 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 60.0 6.07e-01 82.9% 90.0%
3323668 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 70.0 6.85e-01 98.6% 94.7%
3601442 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 64.0 6.66e-01 91.4% 98.5%
3698023 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 70.0 5.87e-01 100.0% 79.1%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 65.0 6.07e-01 91.4% 75.3%
3861026 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 69.0 6.16e-01 100.0% 73.5%
3312720 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 68.0 6.71e-01 98.6% 94.7%
3428197 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 68.0 6.51e-01 97.1% 95.0%
3715255 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 56.0 6.19e-01 95.7% 98.2%
4040935 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 70.0 5.86e-01 100.0% 89.6%
3785386 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 66.0 6.39e-01 97.1% 93.8%
3609228 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 66.0 6.60e-01 98.6% 94.3%
3781279 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 66.0 6.35e-01 98.6% 90.0%
3439829 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 61.0 5.70e-01 100.0% 72.2%
3400371 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 62.0 5.69e-01 95.7% 84.2%
3458027 109.7.1.9 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › TPR_27 0.74 57.0 4.63e-01 82.9% 77.7%
3176338 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 66.0 6.34e-01 100.0% 87.5%
3346715 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 66.0 6.49e-01 100.0% 96.0%
3507423 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 63.0 5.93e-01 97.1% 85.9%
3738910 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 65.0 6.15e-01 100.0% 83.5%
3186415 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 64.0 6.07e-01 100.0% 89.4%
3729172 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 64.0 5.50e-01 100.0% 84.5%
3174979 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 62.0 5.96e-01 100.0% 96.2%
3691114 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 60.0 5.92e-01 92.9% 100.0%
3726268 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 61.0 5.67e-01 98.6% 90.0%
3579997 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.66 56.0 5.60e-01 95.7% 100.0%
3257315 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 52.0 5.20e-01 87.1% 88.6%
4021839 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 55.0 5.25e-01 98.6% 88.2%
3831780 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.56 48.0 4.32e-01 97.1% 99.0%
3264271 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 31.0 2.86e-01 87.1% 46.7%
D2 medium residues 102-255
PDB