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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_neocaledonia

F-box_domain_containing_protein__YP_009482475__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482475 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

70.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (60 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 168-241
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lvqE03 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 47.0 5.12e-01 70.3% 94.9%
3l9tA01 1.10.1240.70 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.62 44.0 4.30e-01 75.7% 81.9%
2ii2A04 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.53 37.0 3.70e-01 75.7% 100.0%
2gpyB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 38.0 2.90e-01 78.4% 50.5%
4e21B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 36.0 3.01e-01 74.3% 85.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3492880 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.65 55.0 4.02e-01 93.2% 59.0%
3668122 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 48.0 4.30e-01 89.2% 76.4%
3821368 109.4.1.1286 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12 0.54 43.0 3.76e-01 91.9% 91.2%
D2 medium residues 278-395
PDB
Domain cluster: rep: Ankyrin_repeat_domain_containing_protein__YP_009481468__Pandoravirus_macleodensis__2107707__D264-366
D3 medium residues 528-634
PDB
Domain cluster: rep: ankyrin_repeat_protein__YP_009119144__Pandoravirus_inopinatum__1605721__D313-411