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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_neocaledonia

F-box_domain_containing_protein__YP_009482610__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482610 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

85.0 mean pLDDT

Taxonomy

TaxID: 2107708

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-61
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 42.0 8.60e-11 90.0% 95.7%
PF00646.39 F-box 23.3 6.40e-05 82.0% 93.0%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.87 63.0 7.01e-01 78.0% 100.0%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.87 67.0 4.17e-01 86.0% 16.2%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.86 73.0 6.06e-01 96.0% 54.0%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.86 76.0 6.28e-01 100.0% 56.8%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 63.0 6.54e-01 86.0% 87.0%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.84 76.0 5.96e-01 100.0% 51.0%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.84 74.0 5.88e-01 100.0% 58.6%
2e31A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.80 70.0 6.57e-01 100.0% 82.3%
3uswA02 1.20.5.2020 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.78 54.0 5.86e-01 74.0% 95.2%
3ogkB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.78 52.0 5.63e-01 78.0% 85.4%
2b6cA01 1.20.1660.10 Mainly Alpha › Up-down Bundle › ARM repeat fold › Hypothetical protein (EF3068) 0.71 55.0 4.23e-01 86.0% 68.1%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.69 53.0 3.71e-01 86.0% 25.9%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 50.0 4.67e-01 86.0% 98.5%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.65 50.0 4.84e-01 86.0% 94.7%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.64 52.0 4.42e-01 98.0% 85.9%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.61 49.0 4.42e-01 100.0% 92.4%
2l9bA00 1.25.40.630 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 44.0 3.73e-01 80.0% 73.6%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 48.0 4.40e-01 96.0% 88.9%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 47.0 3.91e-01 94.0% 59.6%
4l7mA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 47.0 3.05e-01 96.0% 33.3%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 4.13e-01 78.0% 94.2%
2yxyA01 1.10.287.880 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Hypothetical protein YfhH domain 0.58 38.0 3.83e-01 74.0% 66.0%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 39.0 3.65e-01 78.0% 56.3%
1grjA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.55 38.0 3.51e-01 78.0% 59.5%
6b9sB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 34.0 3.04e-01 74.0% 43.8%
8an5A01 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.53 41.0 2.96e-01 98.0% 88.0%
1uouA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 42.0 3.92e-01 94.0% 75.0%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 34.0 3.03e-01 76.0% 44.7%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 35.0 3.30e-01 74.0% 95.5%
1xmcB03 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 38.0 2.77e-01 94.0% 32.2%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3472074 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.96 89.0 6.93e-01 98.0% 51.6%
3276040 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.96 86.0 7.56e-01 96.0% 68.6%
3644704 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 90.0 7.29e-01 100.0% 61.2%
3250247 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 83.0 7.79e-01 94.0% 78.3%
3301883 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 88.0 7.33e-01 100.0% 63.7%
3623404 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 84.0 6.22e-01 98.0% 41.7%
3696138 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 87.0 6.86e-01 100.0% 66.3%
3861026 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 86.0 6.67e-01 100.0% 50.0%
3833527 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 82.0 7.67e-01 94.0% 78.3%
3903969 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 87.0 6.96e-01 100.0% 55.6%
3711287 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.93 83.0 6.35e-01 96.0% 46.2%
3685535 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 84.0 7.05e-01 100.0% 61.3%
3201568 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 79.0 6.97e-01 92.0% 67.1%
3204462 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 85.0 6.16e-01 100.0% 40.8%
4500280 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 86.0 6.99e-01 100.0% 69.4%
3522358 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 85.0 7.31e-01 100.0% 66.7%
4013644 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.92 85.0 6.82e-01 100.0% 66.7%
3348915 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 84.0 6.36e-01 100.0% 45.5%
3652521 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 83.0 7.19e-01 98.0% 68.5%
3248494 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 85.0 7.68e-01 100.0% 76.9%
3730967 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 84.0 6.43e-01 100.0% 48.6%
3806475 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 82.0 7.09e-01 98.0% 66.7%
4023099 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 83.0 6.15e-01 98.0% 42.6%
3209791 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 83.0 7.50e-01 98.0% 75.4%
3698023 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 82.0 6.12e-01 98.0% 42.6%
3194125 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 82.0 6.91e-01 98.0% 61.3%
3420610 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.91 81.0 7.81e-01 98.0% 87.3%
3358453 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 84.0 7.40e-01 100.0% 71.4%
3407033 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 84.0 7.18e-01 100.0% 66.7%
3781279 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 81.0 6.85e-01 98.0% 62.5%
3810074 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.90 81.0 6.86e-01 98.0% 65.8%
3261282 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 82.0 7.98e-01 100.0% 90.9%
4545458 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 81.0 6.32e-01 98.0% 51.0%
3770072 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 81.0 6.60e-01 100.0% 55.6%
3613821 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 79.0 6.98e-01 96.0% 68.6%
3879992 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 80.0 6.75e-01 98.0% 61.3%
4022899 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 81.0 6.35e-01 100.0% 51.0%
3257387 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 82.0 6.73e-01 100.0% 58.8%
3854965 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 81.0 6.56e-01 100.0% 55.6%
3259869 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 81.0 6.67e-01 100.0% 58.8%
3742900 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 79.0 5.65e-01 98.0% 37.0%
3740971 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 81.0 6.67e-01 100.0% 58.8%
3845951 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 76.0 6.27e-01 94.0% 55.3%
3443639 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 76.0 7.66e-01 94.0% 94.0%
3547224 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 80.0 6.61e-01 100.0% 58.8%
3726578 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 78.0 6.46e-01 98.0% 60.0%
3646821 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 6.87e-01 100.0% 68.0%
3355293 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 6.22e-01 100.0% 50.0%
3901480 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 6.71e-01 100.0% 62.5%
3321220 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 64.0 6.97e-01 78.0% 97.5%
3446581 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 78.0 6.52e-01 100.0% 58.8%
3451260 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 77.0 7.24e-01 98.0% 83.3%
4019682 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 77.0 6.22e-01 100.0% 60.0%
3726840 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 77.0 6.67e-01 100.0% 65.3%
3428197 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.87 78.0 6.58e-01 100.0% 61.3%
3731690 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.87 79.0 6.65e-01 100.0% 67.5%
3312720 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 79.0 6.80e-01 100.0% 66.7%
3245054 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 77.0 7.51e-01 100.0% 92.7%
3344543 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 77.0 6.40e-01 100.0% 58.8%
3300009 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 76.0 6.38e-01 96.0% 60.0%
3617289 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 77.0 7.24e-01 100.0% 86.7%
3344585 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 78.0 7.09e-01 100.0% 80.0%
3301272 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 76.0 5.84e-01 100.0% 46.4%
3803973 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 77.0 6.87e-01 100.0% 75.7%
3186415 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 77.0 6.39e-01 100.0% 69.4%
4023603 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 76.0 6.77e-01 100.0% 72.9%
3726236 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 77.0 6.36e-01 100.0% 63.5%
3810743 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.85 76.0 4.77e-01 100.0% 29.8%
3256545 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 75.0 6.86e-01 100.0% 76.9%
3507975 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.85 76.0 4.56e-01 100.0% 91.6%
3363836 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 74.0 6.16e-01 100.0% 57.6%
3454872 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 69.0 6.98e-01 92.0% 94.0%
4021336 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.84 76.0 7.15e-01 100.0% 85.0%
3738910 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 76.0 6.30e-01 100.0% 64.7%
3821430 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 74.0 6.29e-01 100.0% 61.3%
3176338 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 77.0 6.46e-01 100.0% 66.3%
3174979 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 74.0 6.36e-01 100.0% 62.5%
3429995 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 74.0 6.53e-01 100.0% 69.9%
3654886 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 74.0 6.42e-01 100.0% 65.3%
3536855 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 75.0 6.03e-01 100.0% 53.7%
3715255 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 71.0 6.97e-01 98.0% 87.3%
3826054 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 76.0 7.37e-01 100.0% 90.9%
3617852 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 74.0 6.63e-01 100.0% 71.4%
3643181 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 73.0 6.40e-01 100.0% 66.7%
3191118 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 72.0 5.65e-01 100.0% 47.6%
3466887 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 69.0 6.97e-01 94.0% 94.0%
3350782 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 72.0 4.34e-01 100.0% 28.7%
3355899 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 73.0 6.11e-01 100.0% 60.0%
3320433 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 70.0 6.63e-01 96.0% 80.0%
3235397 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.82 69.0 6.53e-01 96.0% 78.3%
3422328 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 72.0 5.96e-01 100.0% 56.5%
3664817 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 70.0 6.02e-01 100.0% 61.3%
3301911 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 70.0 5.84e-01 100.0% 56.5%
3425357 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.81 69.0 6.02e-01 100.0% 62.8%
3812206 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 69.0 6.03e-01 100.0% 65.3%
3829887 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 64.0 6.30e-01 92.0% 87.3%
3644174 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 66.0 5.79e-01 100.0% 62.7%
3691218 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 66.0 6.45e-01 100.0% 85.5%
3552610 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 70.0 6.14e-01 100.0% 70.3%
3819291 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 63.0 6.17e-01 92.0% 85.5%
D4 medium residues 315-386
PDB