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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_neocaledonia

F-box_domain_containing_protein__YP_009482618__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482618 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

77.4 mean pLDDT

Taxonomy

TaxID: 2107708

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-61
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 37.4 2.40e-09 88.2% 93.6%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.88 73.0 6.08e-01 94.1% 54.0%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.85 66.0 4.13e-01 86.3% 16.6%
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 60.0 6.74e-01 76.5% 100.0%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.84 75.0 5.97e-01 100.0% 51.0%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 74.0 6.14e-01 100.0% 58.0%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 61.0 6.35e-01 84.3% 87.0%
4i6jB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.82 59.0 6.33e-01 78.4% 92.9%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.82 72.0 5.81e-01 100.0% 59.6%
2e31A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.77 67.0 6.33e-01 100.0% 82.3%
3ogkB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.75 49.0 5.37e-01 76.5% 85.4%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.69 52.0 3.67e-01 84.3% 25.9%
1qsaA02 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.67 48.0 4.43e-01 78.4% 77.1%
3rv1A01 1.20.1270.260 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.67 51.0 4.33e-01 82.4% 50.0%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.65 49.0 4.81e-01 84.3% 94.7%
4c0dC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.63 45.0 3.34e-01 82.4% 27.5%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 51.0 4.71e-01 90.2% 100.0%
8an5A01 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.63 42.0 2.93e-01 72.5% 29.7%
2l9bA00 1.25.40.630 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 43.0 3.66e-01 78.4% 73.6%
4l7mA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 47.0 3.08e-01 94.1% 20.3%
4l3uA00 1.20.1480.40 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 0.60 49.0 3.89e-01 100.0% 56.9%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 46.0 3.90e-01 94.1% 57.6%
3tjtA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.59 46.0 4.29e-01 94.1% 70.4%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.58 41.0 3.43e-01 76.5% 43.5%
4abxA02 6.10.140.1090 Special › Helix non-globular › Helix Hairpins › 0.57 40.0 3.49e-01 78.4% 64.4%
2l4bA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 39.0 3.29e-01 74.5% 71.6%
3d8lA00 1.10.8.940 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 0.55 38.0 3.32e-01 76.5% 47.3%
1uouA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.54 41.0 3.84e-01 86.3% 70.6%
1ciiA03 1.10.490.30 Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin 0.53 44.0 3.18e-01 96.1% 66.2%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 2.61e-01 100.0% 42.2%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 40.0 3.49e-01 98.0% 84.5%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.50 35.0 3.24e-01 72.5% 95.5%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3276040 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.97 86.0 7.60e-01 94.1% 68.6%
3250247 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.96 84.0 7.88e-01 92.2% 78.3%
3903969 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 87.0 6.98e-01 100.0% 55.6%
3644704 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 89.0 7.29e-01 100.0% 61.2%
3685535 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 86.0 7.21e-01 100.0% 62.5%
3833527 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 81.0 7.60e-01 92.2% 78.3%
3652521 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 83.0 7.26e-01 96.1% 68.5%
3407033 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 85.0 7.29e-01 100.0% 66.7%
3261282 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 82.0 8.00e-01 100.0% 89.1%
3348915 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 84.0 6.34e-01 100.0% 45.5%
3301883 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 86.0 7.23e-01 100.0% 63.7%
3248494 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 84.0 7.66e-01 100.0% 76.9%
3806475 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 82.0 7.07e-01 96.1% 65.3%
3358453 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 86.0 7.57e-01 100.0% 72.9%
3547224 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 83.0 6.83e-01 100.0% 58.8%
3472074 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 85.0 6.75e-01 100.0% 53.7%
3879992 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 81.0 6.84e-01 100.0% 61.3%
3201568 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 76.0 6.76e-01 90.2% 67.1%
3770072 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 81.0 6.63e-01 100.0% 55.6%
3631167 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 82.0 6.78e-01 100.0% 58.8%
3810074 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.91 81.0 6.86e-01 96.1% 64.6%
3204462 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 83.0 6.09e-01 100.0% 42.4%
3726840 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 78.0 6.80e-01 100.0% 64.0%
3420610 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 78.0 7.64e-01 94.1% 87.3%
3595717 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 78.0 7.17e-01 94.1% 73.8%
3762363 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.90 79.0 4.39e-01 94.1% 88.2%
4023099 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 82.0 6.10e-01 100.0% 43.5%
3696138 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 82.0 6.57e-01 100.0% 64.2%
3194125 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 81.0 6.87e-01 100.0% 62.5%
3740971 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 81.0 6.68e-01 100.0% 58.8%
3450709 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 72.0 7.26e-01 86.3% 88.0%
3698023 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 81.0 6.07e-01 100.0% 43.5%
3443639 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 76.0 7.67e-01 92.2% 94.0%
3901480 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 80.0 6.79e-01 100.0% 62.5%
3257387 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 80.0 6.65e-01 100.0% 58.8%
3861026 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 80.0 6.34e-01 100.0% 51.0%
3730967 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 81.0 6.28e-01 100.0% 49.5%
3522358 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 80.0 6.96e-01 100.0% 66.7%
3646821 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 81.0 7.04e-01 100.0% 68.0%
4013644 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.89 81.0 6.60e-01 100.0% 66.7%
4545458 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 82.0 6.40e-01 100.0% 51.0%
4500280 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 81.0 6.73e-01 100.0% 69.4%
3355293 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 78.0 6.19e-01 100.0% 50.0%
3225722 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 77.0 5.75e-01 100.0% 41.7%
3531870 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 64.0 6.46e-01 76.5% 80.0%
4022899 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 80.0 6.29e-01 100.0% 52.0%
3446581 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 78.0 6.50e-01 100.0% 58.8%
3428197 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.88 76.0 6.47e-01 100.0% 60.0%
3613821 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 77.0 6.88e-01 98.0% 70.0%
3443890 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 72.0 7.55e-01 88.2% 100.0%
3742900 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 78.0 5.63e-01 100.0% 37.0%
3726578 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 78.0 6.49e-01 100.0% 58.8%
4019682 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 78.0 6.29e-01 100.0% 61.1%
3821430 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 77.0 6.58e-01 100.0% 62.5%
3312720 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 75.0 6.59e-01 100.0% 65.3%
3731690 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.87 79.0 6.69e-01 100.0% 67.5%
3209791 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 79.0 7.26e-01 100.0% 80.0%
3654886 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 75.0 6.53e-01 100.0% 65.3%
4023603 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 78.0 6.97e-01 100.0% 74.3%
3653326 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 70.0 7.32e-01 88.2% 100.0%
3617852 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 75.0 6.77e-01 100.0% 71.4%
3429995 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 75.0 6.66e-01 100.0% 68.5%
3301272 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 77.0 5.90e-01 100.0% 46.4%
3344543 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 76.0 6.42e-01 100.0% 60.0%
3726236 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 78.0 6.47e-01 100.0% 63.5%
3300009 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 76.0 6.47e-01 100.0% 62.5%
3715255 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 74.0 7.24e-01 98.0% 89.1%
3643181 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 73.0 6.41e-01 100.0% 65.3%
3259869 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 76.0 6.39e-01 100.0% 60.0%
3617289 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 76.0 7.25e-01 100.0% 88.3%
3451260 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 73.0 6.97e-01 96.1% 83.3%
3781279 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 76.0 6.52e-01 100.0% 71.2%
3363836 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 74.0 6.24e-01 100.0% 58.8%
3536855 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 76.0 6.11e-01 100.0% 54.7%
3803973 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 76.0 6.78e-01 100.0% 75.7%
3726245 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 67.0 6.78e-01 92.2% 88.0%
3235397 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.84 71.0 6.75e-01 98.0% 80.0%
3245054 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 73.0 7.19e-01 100.0% 90.9%
3664817 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 74.0 6.36e-01 100.0% 63.7%
3187719 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 73.0 6.48e-01 100.0% 69.3%
3422328 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 72.0 5.97e-01 100.0% 56.5%
3507975 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.83 75.0 4.53e-01 100.0% 17.4%
3320433 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 71.0 6.75e-01 96.1% 81.7%
3344585 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 73.0 6.71e-01 98.0% 80.0%
3301911 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 71.0 5.93e-01 100.0% 56.5%
3810025 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 71.0 6.42e-01 96.1% 70.0%
3810743 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.83 74.0 4.68e-01 100.0% 29.0%
3355899 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 72.0 6.11e-01 100.0% 60.0%
3256545 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 72.0 6.68e-01 100.0% 78.5%
3738910 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 74.0 6.16e-01 100.0% 65.9%
3425357 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.81 71.0 6.23e-01 100.0% 65.4%
3826054 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 71.0 7.00e-01 98.0% 90.9%
4021336 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.81 72.0 6.80e-01 98.0% 85.0%
3186415 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 71.0 6.03e-01 100.0% 70.6%
3176338 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 73.0 6.18e-01 100.0% 65.0%
3466887 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 66.0 6.72e-01 94.1% 96.0%
3552610 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 70.0 6.21e-01 100.0% 70.3%
3691218 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 64.0 6.32e-01 98.0% 87.3%
3829887 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 62.0 6.06e-01 90.2% 87.3%
3819291 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 61.0 5.96e-01 90.2% 85.5%
D2 medium residues 92-134_149-162
PDB
Domain cluster: representative
D3 medium residues 163-285
PDB
D4 medium residues 286-345
PDB