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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_neocaledonia

F-box_domain_containing_protein__YP_009482621__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482621 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

74.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-52
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 39.6 4.80e-10 97.4% 74.5%
PF00646.39 F-box 21.4 2.60e-04 97.4% 74.4%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.90 77.0 4.59e-01 100.0% 14.3%
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.90 74.0 7.44e-01 92.1% 92.1%
4i6jB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.86 73.0 7.11e-01 100.0% 88.1%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 68.0 5.28e-01 100.0% 42.0%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.80 67.0 6.42e-01 100.0% 82.6%
3ogkB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.78 60.0 5.94e-01 100.0% 82.9%
3ljcA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 54.0 3.73e-01 76.3% 23.0%
2i7nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 41.0 2.90e-01 100.0% 31.0%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3202188 207.1.1.309 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_15 0.97 85.0 4.66e-01 94.7% 7.8%
3697245 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.97 89.0 8.77e-01 100.0% 95.0%
3635190 109.3.1.170 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_4 0.97 80.0 4.67e-01 89.5% 13.2%
3430952 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.96 86.0 4.70e-01 97.4% 7.7%
3720343 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.96 86.0 6.43e-01 97.4% 43.5%
3639389 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.96 86.0 4.75e-01 97.4% 8.4%
3399647 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.96 86.0 7.46e-01 97.4% 67.3%
3469135 207.1.1.134 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.96 87.0 4.88e-01 100.0% 10.0%
3439829 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 87.0 6.38e-01 100.0% 42.2%
3834035 145.1.1.26 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › LRR_6, DUF7885 0.95 85.0 4.72e-01 97.4% 9.5%
3826138 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.95 84.0 4.63e-01 97.4% 8.3%
4012387 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.94 86.0 6.69e-01 100.0% 52.0%
3347634 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.94 85.0 8.04e-01 100.0% 86.7%
3424909 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.94 73.0 4.03e-01 84.2% 6.8%
3665986 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.94 75.0 7.09e-01 86.8% 73.3%
3312286 207.1.1.134 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.94 85.0 4.76e-01 100.0% 9.9%
3679680 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 84.0 5.81e-01 100.0% 33.0%
None — 0.93 72.0 3.92e-01 84.2% 5.6%
3685791 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 85.0 7.43e-01 100.0% 69.1%
3825669 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 84.0 7.59e-01 100.0% 76.0%
3916304 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.93 83.0 6.19e-01 100.0% 42.2%
3390129 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.93 82.0 4.91e-01 100.0% 15.8%
4422459 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 83.0 6.68e-01 100.0% 54.3%
None — 0.93 72.0 4.18e-01 84.2% 11.4%
3434959 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.93 72.0 6.78e-01 84.2% 71.1%
3441758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.93 83.0 4.67e-01 100.0% 10.3%
3693224 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.93 79.0 7.78e-01 94.7% 90.0%
3443498 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.93 79.0 5.97e-01 94.7% 42.4%
4012180 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.93 84.0 5.52e-01 100.0% 27.9%
4284024 207.1.1.224 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF29466, PF29477 0.93 80.0 4.70e-01 97.4% 13.3%
3422989 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.92 80.0 4.41e-01 97.4% 7.9%
3404584 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 83.0 7.82e-01 100.0% 84.4%
3643098 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 83.0 7.25e-01 100.0% 70.9%
3423604 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 82.0 7.42e-01 100.0% 74.0%
3725732 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.92 81.0 6.31e-01 100.0% 47.5%
3834480 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.91 78.0 4.38e-01 94.7% 9.6%
3396126 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.91 81.0 4.60e-01 100.0% 10.4%
3418207 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.91 70.0 7.19e-01 84.2% 91.4%
3730335 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.91 82.0 7.44e-01 100.0% 78.0%
3319774 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 80.0 6.38e-01 100.0% 50.7%
3999567 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 80.0 5.98e-01 100.0% 42.2%
3698257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 80.0 6.24e-01 100.0% 47.5%
3403835 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.91 79.0 6.06e-01 100.0% 44.7%
3370474 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 80.0 6.64e-01 100.0% 58.5%
3819371 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 74.0 6.57e-01 92.1% 63.6%
3324307 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.91 79.0 6.61e-01 100.0% 58.5%
3339201 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 80.0 7.52e-01 97.4% 82.2%
3314603 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.91 77.0 7.29e-01 100.0% 80.0%
3643363 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.91 79.0 7.83e-01 100.0% 95.0%
3349925 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 79.0 7.51e-01 100.0% 84.4%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 76.0 5.91e-01 94.7% 45.0%
3437951 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.90 79.0 4.35e-01 100.0% 8.0%
None — 0.90 78.0 4.57e-01 97.4% 13.7%
3733544 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.90 78.0 4.29e-01 100.0% 7.1%
3299681 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 79.0 7.23e-01 100.0% 76.0%
3806502 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.90 73.0 7.54e-01 94.7% 100.0%
3685753 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.90 78.0 5.98e-01 100.0% 45.9%
3300168 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 78.0 6.56e-01 100.0% 58.5%
3698443 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 77.0 7.07e-01 100.0% 76.0%
None — 0.89 75.0 4.08e-01 94.7% 6.3%
3441517 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 76.0 4.21e-01 97.4% 7.3%
3365920 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.89 76.0 4.24e-01 97.4% 8.8%
3447860 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.89 77.0 7.34e-01 100.0% 84.4%
3640174 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 77.0 6.17e-01 100.0% 50.7%
3204329 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 77.0 5.56e-01 100.0% 38.1%
3671556 207.1.1.134 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.89 79.0 4.27e-01 100.0% 5.7%
3816175 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.88 72.0 7.45e-01 94.7% 100.0%
3189958 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 75.0 7.16e-01 100.0% 86.7%
3433159 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 72.0 7.16e-01 97.4% 90.0%
3422849 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 75.0 6.93e-01 100.0% 76.0%
3184851 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 76.0 5.82e-01 100.0% 45.9%
3814088 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 75.0 7.15e-01 97.4% 82.2%
3464778 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 75.0 5.77e-01 100.0% 45.9%
3924097 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 77.0 7.31e-01 100.0% 84.4%
3207824 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 74.0 4.33e-01 100.0% 12.0%
3727492 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 73.0 7.05e-01 100.0% 86.7%
3452927 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 75.0 7.16e-01 100.0% 84.4%
3848693 145.1.1.37 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_2, F-box-like, Kelch_3, Kelch_KLHDC2_KLHL20_DRC7 0.87 74.0 4.22e-01 100.0% 9.6%
3660681 207.1.1.246 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box_5 0.86 74.0 4.22e-01 97.4% 10.6%
3420019 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 69.0 7.07e-01 92.1% 100.0%
3835205 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.86 73.0 3.98e-01 97.4% 6.4%
3461664 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 73.0 7.01e-01 100.0% 84.4%
3781797 145.1.1.31 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › PF29466 0.86 72.0 6.97e-01 100.0% 84.4%
3924438 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 75.0 6.66e-01 100.0% 69.1%
3316546 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 72.0 6.32e-01 100.0% 63.3%
3467963 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 72.0 6.87e-01 97.4% 82.2%
3683657 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 72.0 5.63e-01 100.0% 44.7%
3677125 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 69.0 4.01e-01 92.1% 11.6%
2860146 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 70.0 6.42e-01 100.0% 71.7%
2420136 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 69.0 6.38e-01 100.0% 71.7%
3443195 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 72.0 7.13e-01 100.0% 95.0%
3434120 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 69.0 6.94e-01 97.4% 94.9%
3315130 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 70.0 6.95e-01 100.0% 92.5%
3180622 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 70.0 6.54e-01 100.0% 76.0%
3633421 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 66.0 3.66e-01 94.7% 7.1%
3354858 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 67.0 6.68e-01 100.0% 95.0%
3448206 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 68.0 6.14e-01 100.0% 69.1%
3435820 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 63.0 6.50e-01 97.4% 100.0%
3726805 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 63.0 5.53e-01 100.0% 59.4%
D2 medium residues 92-227
PDB
Domain cluster: rep: morn_repeat_domain__YP_008437177__Pandoravirus_salinus__1349410__D172-314