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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_neocaledonia

F-box_domain_containing_protein__YP_009482632__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482632 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

72.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-92
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.74 53.0 5.01e-01 90.4% 63.2%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.70 58.0 5.51e-01 91.8% 87.5%
1fouA01 1.10.246.30 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.69 42.0 4.26e-01 98.6% 60.8%
1w2qA01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.68 60.0 5.19e-01 98.6% 85.8%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 46.0 4.54e-01 71.2% 66.7%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.66 51.0 4.55e-01 86.3% 58.5%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 57.0 4.65e-01 100.0% 73.0%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.64 52.0 3.44e-01 98.6% 23.9%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 56.0 4.48e-01 100.0% 67.3%
4ap2B01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.64 50.0 4.14e-01 86.3% 79.9%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.63 51.0 4.69e-01 91.8% 92.9%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 55.0 4.47e-01 98.6% 71.4%
4jgiA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.63 53.0 5.19e-01 95.9% 98.8%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 42.0 4.29e-01 71.2% 72.6%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 42.0 4.20e-01 71.2% 89.6%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.61 48.0 4.60e-01 86.3% 82.8%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 49.0 4.18e-01 89.0% 72.1%
2iakA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 49.0 3.64e-01 89.0% 41.7%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.61 47.0 4.05e-01 86.3% 73.6%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.60 45.0 4.11e-01 80.8% 98.0%
2r31A02 1.10.3580.10 Mainly Alpha › Orthogonal Bundle › ATP12-like fold › ATP12 ATPase 0.60 49.0 3.73e-01 89.0% 68.2%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.60 48.0 4.26e-01 90.4% 60.9%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 49.0 4.38e-01 89.0% 84.2%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.60 41.0 3.87e-01 71.2% 59.8%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 42.0 3.85e-01 75.3% 76.8%
3zbhA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 40.0 3.75e-01 71.2% 57.8%
2wviA00 1.25.40.430 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 47.0 3.73e-01 97.3% 41.2%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 46.0 3.66e-01 89.0% 45.8%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.57 43.0 4.31e-01 89.0% 80.5%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 39.0 3.96e-01 71.2% 72.2%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 43.0 4.29e-01 90.4% 85.1%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.56 42.0 3.36e-01 80.8% 57.2%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 42.0 4.23e-01 90.4% 84.0%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 43.0 4.17e-01 89.0% 85.9%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.54 42.0 4.01e-01 89.0% 81.3%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 39.0 3.75e-01 89.0% 66.7%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 40.0 3.53e-01 87.7% 84.4%
4l7mA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 45.0 3.14e-01 98.6% 41.4%
2vs0A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.52 40.0 3.83e-01 80.8% 78.0%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 41.0 3.54e-01 89.0% 79.2%
3hqiA02 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.51 37.0 3.04e-01 89.0% 40.0%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3276040 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 60.0 6.13e-01 93.2% 77.1%
3595717 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 62.0 6.59e-01 91.8% 89.2%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 58.0 5.51e-01 87.7% 70.6%
3806475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 60.0 5.99e-01 89.0% 82.7%
3781279 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 63.0 6.13e-01 91.8% 82.5%
3770072 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 61.0 5.65e-01 93.2% 71.1%
3348915 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 61.0 5.28e-01 89.0% 76.4%
3320433 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 56.0 6.08e-01 91.8% 98.3%
3810074 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 60.0 5.89e-01 90.4% 81.0%
3380116 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 56.0 5.82e-01 91.8% 88.2%
3728200 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 55.0 5.67e-01 95.9% 84.3%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 60.0 5.32e-01 89.0% 82.0%
3643181 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 57.0 5.69e-01 89.0% 82.7%
3652521 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 61.0 6.12e-01 89.0% 91.8%
3762363 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 61.0 3.53e-01 90.4% 12.0%
3446581 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 59.0 5.63e-01 89.0% 85.9%
3664817 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 60.0 5.83e-01 93.2% 87.5%
3654886 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 56.0 5.55e-01 90.4% 82.7%
3821430 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 58.0 5.65e-01 90.4% 81.2%
3355899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 57.0 5.47e-01 89.0% 90.6%
3901480 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 59.0 5.74e-01 90.4% 83.7%
3623404 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 59.0 4.92e-01 89.0% 73.0%
3812507 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.69 57.0 5.20e-01 90.4% 68.8%
3731690 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.68 60.0 5.87e-01 95.9% 88.7%
3257162 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.68 61.0 5.36e-01 98.6% 77.1%
4545458 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 57.0 5.08e-01 89.0% 81.0%
5026085 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.68 52.0 4.64e-01 84.9% 86.1%
3385347 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.68 57.0 5.55e-01 91.8% 89.9%
4393144 604.39.1.9 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 0.68 59.0 4.20e-01 100.0% 53.0%
3225722 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 57.0 4.82e-01 90.4% 91.3%
3363533 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 57.0 5.66e-01 93.2% 92.0%
3347843 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 55.0 5.36e-01 90.4% 87.5%
3617852 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 55.0 5.67e-01 90.4% 92.9%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 55.0 5.40e-01 90.4% 83.7%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.66 55.0 5.46e-01 93.2% 88.5%
3324058 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 57.0 3.60e-01 95.9% 99.2%
3344543 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.66 55.0 5.29e-01 93.2% 83.5%
3424086 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.66 55.0 4.22e-01 94.5% 68.6%
3812206 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 55.0 5.49e-01 93.2% 93.3%
3363836 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 55.0 5.23e-01 93.2% 84.7%
3796461 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.65 50.0 5.02e-01 89.0% 82.7%
4013725 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 55.0 5.34e-01 93.2% 86.3%
3465357 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.65 52.0 4.52e-01 89.0% 71.3%
4016578 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.64 51.0 4.57e-01 89.0% 77.1%
3275127 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 52.0 3.24e-01 91.8% 15.4%
3697864 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 56.0 4.89e-01 95.9% 91.4%
5043558 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.63 43.0 4.30e-01 71.2% 94.6%
5029773 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 45.0 4.57e-01 89.0% 78.4%
3393794 3922.1.1.211 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DRC7_C 0.62 47.0 3.89e-01 83.6% 85.2%
3548194 192.2.1.18 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.61 42.0 3.66e-01 71.2% 50.9%
3442429 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 50.0 3.73e-01 89.0% 44.3%
3286299 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.61 42.0 3.65e-01 71.2% 47.3%
3193842 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.61 53.0 4.41e-01 95.9% 75.2%
222846 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.60 41.0 3.83e-01 71.2% 64.5%
4946897 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.60 48.0 3.69e-01 89.0% 71.8%
3462342 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.60 53.0 4.29e-01 100.0% 74.1%
3270441 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.59 45.0 4.48e-01 90.4% 82.7%
3756535 604.1.1.5 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_3 0.59 47.0 4.09e-01 89.0% 73.0%
3670337 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 48.0 4.59e-01 95.9% 90.0%
3932069 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.58 43.0 4.30e-01 84.9% 78.7%
4943532 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.58 40.0 4.09e-01 71.2% 74.3%
3884438 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.58 44.0 4.33e-01 90.4% 77.5%
4017467 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 48.0 3.48e-01 95.9% 43.1%
3263198 5000.4.1.0 ↗ alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain 0.56 48.0 3.35e-01 100.0% 85.9%
3504303 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 45.0 4.15e-01 90.4% 84.0%
3621359 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 47.0 4.57e-01 98.6% 84.7%
4024160 5050.1.1.32 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.54 46.0 2.81e-01 100.0% 27.4%
3946910 3755.1.1.0 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.51 40.0 3.10e-01 89.0% 77.8%
3638943 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.50 43.0 2.67e-01 100.0% 44.9%